Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00819 ATGGGGAAGAAAGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGAAAACCAACAAATCCAAGAAGAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTTGCCGCCGAGGCCGCCGTCGCAGCCGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCACTAGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTACATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTCATGGATCCGAACAATCCCCATTGGGGCTGGAGTTGGTTGGAACGATGGATGGCCGCTCGTCCATGGGAGGCTAAGAGCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTTCCAAATCGTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGGCGCCACAGCATCGCCGGATCATCAGTGAGGGACGATGAAAGCTTCACGAGTTCGCCATCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCAAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGATCTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCGAGAGAGATTTCACCGGCGAGAGCCGATAG 1428 52.17 MGKKGGWFSAVKKAFATESKEKKEQKTNKSKKRWFGKPKKLETAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTITRYSGKSKEEIAAIKIQTTFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKSTADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSPRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPAISRRHSGPPKVDTNPIERDFTGESR 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7295985 7299804 + Cp4.1LG13g09790.1 Cpe13g00819 480017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00819 475 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
Cpe13g00819 475 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 464 - -
Cpe13g00819 475 MobiDBLite consensus disorder prediction 460 475 - -
Cpe13g00819 475 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Cpe13g00819 475 SMART iq_5 107 129 IPR000048 GO:0005515
Cpe13g00819 475 MobiDBLite consensus disorder prediction 318 345 - -
Cpe13g00819 475 MobiDBLite consensus disorder prediction 389 405 - -
Cpe13g00819 475 PANTHER IQ-DOMAIN 5-RELATED 1 464 - -
Cpe13g00819 475 MobiDBLite consensus disorder prediction 412 430 - -
Cpe13g00819 475 MobiDBLite consensus disorder prediction 313 475 - -
Cpe13g00819 475 Coils Coil 171 191 - -
Cpe13g00819 475 MobiDBLite consensus disorder prediction 371 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00819 - - - csv:101209731 761.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02257 Cpe13g00819 CCT
Cpe01g01224 Cpe13g00819 CCT
Cpe01g02257 Cpe13g00819 ECH
Cpe01g01224 Cpe13g00819 ECH
Cpe09g00427 Cpe13g00819 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00243 Cpe-Chr6:1295976 Cpe13g00819 Cpe-Chr13:7295985 1.25E-44 dispersed
Cpe09g00427 Cpe-Chr9:2720724 Cpe13g00819 Cpe-Chr13:7295985 9.40E-100 dispersed
Cpe10g00203 Cpe-Chr10:1176206 Cpe13g00819 Cpe-Chr13:7295985 2.95E-122 dispersed
Cpe12g00436 Cpe-Chr12:3406540 Cpe13g00819 Cpe-Chr13:7295985 5.14E-39 dispersed
Cpe13g00819 Cpe-Chr13:7295985 Cpe18g00224 Cpe-Chr18:3887819 1.22E-50 dispersed
Cpe01g02257 Cpe-Chr1:19147453 Cpe13g00819 Cpe-Chr13:7295985 0 wgd
Cpe01g01224 Cpe-Chr1:7309625 Cpe13g00819 Cpe-Chr13:7295985 1.86E-93 wgd
Cpe13g00819 Cpe-Chr13:7295985 Cpe19g00400 Cpe-Chr19:3562230 2.06E-123 wgd
Cpe13g00819 Cpe-Chr13:7295985 Cpe08g01113 Cpe-Chr8:8391889 3.27E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00819 Cpe_Chr13 FPKM 1.912148 2.503148 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0