Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00819 | ATGGGGAAGAAAGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGAAAACCAACAAATCCAAGAAGAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTTGCCGCCGAGGCCGCCGTCGCAGCCGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCACTAGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTACATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTCATGGATCCGAACAATCCCCATTGGGGCTGGAGTTGGTTGGAACGATGGATGGCCGCTCGTCCATGGGAGGCTAAGAGCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTTCCAAATCGTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGGCGCCACAGCATCGCCGGATCATCAGTGAGGGACGATGAAAGCTTCACGAGTTCGCCATCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCAAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGATCTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCGAGAGAGATTTCACCGGCGAGAGCCGATAG | 1428 | 52.17 | MGKKGGWFSAVKKAFATESKEKKEQKTNKSKKRWFGKPKKLETAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTITRYSGKSKEEIAAIKIQTTFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKSTADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSPRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPAISRRHSGPPKVDTNPIERDFTGESR | 475 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7295985 | 7299804 | + | Cp4.1LG13g09790.1 | Cpe13g00819 | 480017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00819 | 475 | ProSiteProfiles | IQ motif profile. | 108 | 136 | IPR000048 | GO:0005515 | |
| Cpe13g00819 | 475 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 1 | 464 | - | - | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 460 | 475 | - | - | |
| Cpe13g00819 | 475 | Pfam | IQ calmodulin-binding motif | 111 | 129 | IPR000048 | GO:0005515 | |
| Cpe13g00819 | 475 | SMART | iq_5 | 107 | 129 | IPR000048 | GO:0005515 | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 318 | 345 | - | - | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 389 | 405 | - | - | |
| Cpe13g00819 | 475 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 464 | - | - | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 412 | 430 | - | - | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 313 | 475 | - | - | |
| Cpe13g00819 | 475 | Coils | Coil | 171 | 191 | - | - | |
| Cpe13g00819 | 475 | MobiDBLite | consensus disorder prediction | 371 | 388 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g02257 | Cpe13g00819 | CCT | |
| Cpe01g01224 | Cpe13g00819 | CCT | |
| Cpe01g02257 | Cpe13g00819 | ECH | |
| Cpe01g01224 | Cpe13g00819 | ECH | |
| Cpe09g00427 | Cpe13g00819 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe06g00243 | Cpe-Chr6:1295976 | Cpe13g00819 | Cpe-Chr13:7295985 | 1.25E-44 | dispersed | |
| Cpe09g00427 | Cpe-Chr9:2720724 | Cpe13g00819 | Cpe-Chr13:7295985 | 9.40E-100 | dispersed | |
| Cpe10g00203 | Cpe-Chr10:1176206 | Cpe13g00819 | Cpe-Chr13:7295985 | 2.95E-122 | dispersed | |
| Cpe12g00436 | Cpe-Chr12:3406540 | Cpe13g00819 | Cpe-Chr13:7295985 | 5.14E-39 | dispersed | |
| Cpe13g00819 | Cpe-Chr13:7295985 | Cpe18g00224 | Cpe-Chr18:3887819 | 1.22E-50 | dispersed | |
| Cpe01g02257 | Cpe-Chr1:19147453 | Cpe13g00819 | Cpe-Chr13:7295985 | 0 | wgd | |
| Cpe01g01224 | Cpe-Chr1:7309625 | Cpe13g00819 | Cpe-Chr13:7295985 | 1.86E-93 | wgd | |
| Cpe13g00819 | Cpe-Chr13:7295985 | Cpe19g00400 | Cpe-Chr19:3562230 | 2.06E-123 | wgd | |
| Cpe13g00819 | Cpe-Chr13:7295985 | Cpe08g01113 | Cpe-Chr8:8391889 | 3.27E-10 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00819 | - | - | csv:101209731 | 761.525 |