Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00820 ATGAACGCTAAACAGCAAACTATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACGAGCAGTTTAGTATATGAAGCGAACGCTAGGATTCGAGACCCGATCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCCCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCGAGAAGTCCCAGTCTTGTGCCAAGACCACTTTCCATTTAGTGATTTAAACCCTATTCCACATTATTACAAATCTTCCAATATTTCTTGGGACTCCTCGTGGACTTCATCATCGTTCTAA 564 48.76 MNAKQQTMQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPIYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQVRVEGREVPVLCQDHFPFSDLNPIPHYYKSSNISWDSSWTSSSF 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7303134 7305467 + Cp4.1LG13g09830.1 Cpe13g00820 480018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00820 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 12 147 - -
Cpe13g00820 187 Coils Coil 102 129 - -
Cpe13g00820 187 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
Cpe13g00820 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 147 - -
Cpe13g00820 187 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00820 Cpe-Chr13:7303134 Cpe20g00754 Cpe-Chr20:6701146 9.72E-60 dispersed
Cpe01g00236 Cpe-Chr1:1342584 Cpe13g00820 Cpe-Chr13:7303134 5.22E-68 wgd
Cpe01g01139 Cpe-Chr1:6773070 Cpe13g00820 Cpe-Chr13:7303134 1.78E-66 wgd
Cpe13g00820 Cpe-Chr13:7303134 Cpe16g00556 Cpe-Chr16:6368390 1.04E-62 wgd
Cpe13g00820 Cpe-Chr13:7303134 Cpe05g00866 Cpe-Chr5:5685489 6.16E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50443 PF03195 LOB 3.70E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00820 - - mnt:21397274 211.846