Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00846 ATGAGACAGGCCACGAAGGATGCCGGTGTCATTTCGGGTCTTAATGTGATGCGTATCATCAACGAACCAACTGCTGCCGCAATTGCTTATGGGCTGGACAAGAAGTCCAGCAGCTCTGGCGAAAAGAACGTTCTGATTTTTGATTTGGGTGGTGGAACTTTTGATGTTTCATTGCTTACGATCGAAGAAGGGATTTTTGAGGTGAAGGCAACTGCAGGAGACACTCATCTTGGTGGCGAAGATTTTGATAACAGATTGGTTAACCACTTCGTGCAGGAATTCAAGAGAAAGAATAAGAAAGACATTAGTGGAAACCCCAGGGCTCTTAGGAGGTTGAGAACCGCTTGTGAAAGGGCTAAGAGAACCCTTTCCTCCTCTGCTCAAACTACACTTGAGATCGACTCTCTTTTTGAAGGAATTGACTTCTATTCAACCATTACCCGTGCTAGATTTGAGGAACTCAATATGGATCTTTTCAGAAAGTGTATGGAACCTGTTGAGAAGTGCTTGAGAGATGCTAAGATGGACAAAAACAGTGTCGATGACGTTGTTCTTGTTGGTGGCTCCACCAGGATTCCCAAGGTGCAGCAATTATTGCAGGATTTCCTCAATGGCAAAGAGCTTTGCAAGAGTATCAACCCTGATGAAGCTGTTGCCTATGGGGCGGCCGTACAGGCTGCCATCTTGAGCGGTGAGGGTAATGAGAAGGTCCAGGATCTTTTGCTTCTGGATGTCACCCCTCTTTCCCTTGGACTGGAAACAGCCGGTGCTGAGGATAAAACCACGGGTCAGAAGAACAAGATCACAATCACCAACGACAAGGGGCGGTTGTCGAAGGAGGAGATTGAGAAGATGGTGCACGAAGCAGAGAAATACAAGGCGGACGATGAGGAACACAAGAAGAAGATCGAAGCTAAAAACTCCTTGGAAAACTTTGCTTATAATATGAGAAACACTGTGAGGGACGGGAAGTTCAGCTCTCAAATGGACCCCGCGGACAAGAAGAAGATCGAGGATGCTATAGAACATGCAGTCCAGTGGCTTGACAACAACCAACTTGCCGAGGTGGACGAGATAGAAGATCAAATGAAGGAGCTTCAGAATATTTGCAACCCAATCGTTGCCAAGATATACCAGGGCGTCGGTGTACCTGGCATGCCTGGTGCTGCTATGGATGACAACTATGTTCCACCTCCGTCTGGTGGAAGCGCCGCCGGTCCTAAAATCGAGGAAGTTGATTAA 1242 47.1 MRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSSAQTTLEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVDDVVLVGGSTRIPKVQQLLQDFLNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGAEDKTTGQKNKITITNDKGRLSKEEIEKMVHEAEKYKADDEEHKKKIEAKNSLENFAYNMRNTVRDGKFSSQMDPADKKKIEDAIEHAVQWLDNNQLAEVDEIEDQMKELQNICNPIVAKIYQGVGVPGMPGAAMDDNYVPPPSGGSAAGPKIEEVD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7456870 7458911 + Cp4.1LG13g09410.1 Cpe13g00846 480044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00846 413 Pfam Hsp70 protein 257 379 IPR013126 GO:0005524|GO:0140662
Cpe13g00846 413 Pfam Hsp70 protein 2 256 IPR013126 GO:0005524|GO:0140662
Cpe13g00846 413 PRINTS 70kDa heat shock protein signature 239 258 - -
Cpe13g00846 413 PRINTS 70kDa heat shock protein signature 52 62 - -
Cpe13g00846 413 PRINTS 70kDa heat shock protein signature 180 196 - -
Cpe13g00846 413 PRINTS 70kDa heat shock protein signature 212 232 - -
Cpe13g00846 413 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 2 256 - -
Cpe13g00846 413 SUPERFAMILY Actin-like ATPase domain 2 34 IPR043129 -
Cpe13g00846 413 Gene3D - 35 209 - -
Cpe13g00846 413 SUPERFAMILY Actin-like ATPase domain 40 231 IPR043129 -
Cpe13g00846 413 Gene3D - 2 226 - -
Cpe13g00846 413 ProSitePatterns Heat shock hsp70 proteins family signature 2. 46 59 IPR018181 -
Cpe13g00846 413 Gene3D - 306 380 IPR029048 -
Cpe13g00846 413 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 235 310 IPR029047 -
Cpe13g00846 413 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 257 389 - -
Cpe13g00846 413 MobiDBLite consensus disorder prediction 389 413 - -
Cpe13g00846 413 Coils Coil 349 369 - -
Cpe13g00846 413 ProSitePatterns Heat shock hsp70 proteins family signature 3. 183 197 IPR018181 -
Cpe13g00846 413 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 256 305 IPR029047 -
Cpe13g00846 413 Gene3D Actin; Chain A, domain 4 78 161 - -
Cpe13g00846 413 PANTHER HEAT SHOCK PROTEIN 70KDA 257 389 IPR013126 GO:0005524|GO:0140662
Cpe13g00846 413 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 304 385 IPR029048 -
Cpe13g00846 413 PANTHER HEAT SHOCK PROTEIN 70KDA 2 256 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00846 Cpe-Chr13:7456870 Cpe18g00576 Cpe-Chr18:6213170 9.04E-54 dispersed
Cpe13g00846 Cpe-Chr13:7456870 Cpe13g00849 Cpe-Chr13:7464166 9.87E-67 proximal
Cpe01g02287 Cpe-Chr1:19349625 Cpe13g00846 Cpe-Chr13:7456870 8.94E-93 wgd
Cpe10g00880 Cpe-Chr10:4955234 Cpe13g00846 Cpe-Chr13:7456870 6.67E-74 wgd
Cpe13g00846 Cpe-Chr13:7456870 Cpe19g00364 Cpe-Chr19:3302661 1.25E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00846 K03283 - csv:101210925 517.309