Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00850 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGGCTAATAATGCTCAACATCTTCCACCTCCGCCACCCCCGGCTGCCGGTGGCGGTGGGCCTGGCTCGATTCGACCCGGCTCGATGACGGATCGAGCTAGGTTAGCGAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCTGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCTCCGCCGCCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGCGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCATCAACATCAACATCAACATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAGATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTTCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACCACAACAACAACACCAGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1062 45.76 MVFSSVPVFLDPPNWPSQQPNQLQPSSCEANNAQHLPPPPPPAAGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSAGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHHQHQHQHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTPGNTAWSTDQISDLL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7470504 7472172 + Cp4.1LG13g09370.1 Cpe13g00850 480048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00850 353 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 275 IPR045174 GO:0003700|GO:0006355
Cpe13g00850 353 MobiDBLite consensus disorder prediction 132 160 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 11 57 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 114 183 - -
Cpe13g00850 353 SUPERFAMILY Formin homology 2 domain (FH2 domain) 166 176 - -
Cpe13g00850 353 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 MobiDBLite consensus disorder prediction 163 180 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 11 33 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 322 353 - -
Cpe13g00850 353 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 16 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00850 - - - cmo:103498163 430.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00850 Cpe-Chr13:7470504 Cpe20g00813 Cpe-Chr20:7378828 5.23E-52 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe13g00850 Cpe-Chr13:7470504 2.21E-149 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe13g00850 Cpe-Chr13:7470504 1.04E-47 wgd
Cpe01g01095 Cpe-Chr1:6475077 Cpe13g00850 Cpe-Chr13:7470504 2.10E-53 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe13g00850 Cpe-Chr13:7470504 2.39E-44 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe16g00602 Cpe-Chr16:6669904 4.92E-46 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe19g00362 Cpe-Chr19:3293086 3.89E-33 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe03g00124 Cpe-Chr3:627920 3.53E-42 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe05g00913 Cpe-Chr5:6006866 9.93E-48 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe08g01160 Cpe-Chr8:8615889 1.81E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50444 PF02701 zf-Dof 1.30E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00850 Cpe_Chr13 FPKM 3.796137 1.411742 2.675551 2.512108 5.719316 3.50875 3.644814 1.813893 2.052148 2.502566