Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00850 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGGCTAATAATGCTCAACATCTTCCACCTCCGCCACCCCCGGCTGCCGGTGGCGGTGGGCCTGGCTCGATTCGACCCGGCTCGATGACGGATCGAGCTAGGTTAGCGAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCTGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCTCCGCCGCCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGCGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCATCAACATCAACATCAACATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAGATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTTCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACCACAACAACAACACCAGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1062 45.76 MVFSSVPVFLDPPNWPSQQPNQLQPSSCEANNAQHLPPPPPPAAGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSAGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHHQHQHQHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTPGNTAWSTDQISDLL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7470504 7472172 + Cp4.1LG13g09370.1 Cpe13g00850 480048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00850 353 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 275 IPR045174 GO:0003700|GO:0006355
Cpe13g00850 353 MobiDBLite consensus disorder prediction 132 160 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 11 57 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 114 183 - -
Cpe13g00850 353 SUPERFAMILY Formin homology 2 domain (FH2 domain) 166 176 - -
Cpe13g00850 353 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 MobiDBLite consensus disorder prediction 163 180 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 11 33 - -
Cpe13g00850 353 MobiDBLite consensus disorder prediction 322 353 - -
Cpe13g00850 353 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
Cpe13g00850 353 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 16 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00850 Cpe-Chr13:7470504 Cpe20g00813 Cpe-Chr20:7378828 5.23E-52 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe13g00850 Cpe-Chr13:7470504 2.21E-149 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe13g00850 Cpe-Chr13:7470504 1.04E-47 wgd
Cpe01g01095 Cpe-Chr1:6475077 Cpe13g00850 Cpe-Chr13:7470504 2.10E-53 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe13g00850 Cpe-Chr13:7470504 2.39E-44 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe16g00602 Cpe-Chr16:6669904 4.92E-46 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe19g00362 Cpe-Chr19:3293086 3.89E-33 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe03g00124 Cpe-Chr3:627920 3.53E-42 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe05g00913 Cpe-Chr5:6006866 9.93E-48 wgd
Cpe13g00850 Cpe-Chr13:7470504 Cpe08g01160 Cpe-Chr8:8615889 1.81E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50444 PF02701 zf-Dof 1.30E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00850 - - cmo:103498163 430.639