Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00850 | ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGGCTAATAATGCTCAACATCTTCCACCTCCGCCACCCCCGGCTGCCGGTGGCGGTGGGCCTGGCTCGATTCGACCCGGCTCGATGACGGATCGAGCTAGGTTAGCGAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCTGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCTCCGCCGCCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGCGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCATCAACATCAACATCAACATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAGATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTTCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACCACAACAACAACACCAGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA | 1062 | 45.76 | MVFSSVPVFLDPPNWPSQQPNQLQPSSCEANNAQHLPPPPPPAAGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSAGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHHQHQHQHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTPGNTAWSTDQISDLL | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7470504 | 7472172 | + | Cp4.1LG13g09370.1 | Cpe13g00850 | 480048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00850 | 353 | ProSitePatterns | Zinc finger Dof-type signature. | 75 | 111 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe13g00850 | 353 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 16 | 275 | IPR045174 | GO:0003700|GO:0006355 | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 132 | 160 | - | - | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 11 | 57 | - | - | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 114 | 183 | - | - | |
Cpe13g00850 | 353 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 166 | 176 | - | - | |
Cpe13g00850 | 353 | ProSiteProfiles | Zinc finger Dof-type profile. | 73 | 127 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 163 | 180 | - | - | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - | |
Cpe13g00850 | 353 | MobiDBLite | consensus disorder prediction | 322 | 353 | - | - | |
Cpe13g00850 | 353 | Pfam | Dof domain, zinc finger | 73 | 127 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe13g00850 | 353 | PANTHER | DOF ZINC FINGER PROTEIN DOF2.4-LIKE | 16 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe20g00813 | Cpe-Chr20:7378828 | 5.23E-52 | dispersed | |
Cpe01g02293 | Cpe-Chr1:19379956 | Cpe13g00850 | Cpe-Chr13:7470504 | 2.21E-149 | wgd | |
Cpe01g00186 | Cpe-Chr1:1055284 | Cpe13g00850 | Cpe-Chr13:7470504 | 1.04E-47 | wgd | |
Cpe01g01095 | Cpe-Chr1:6475077 | Cpe13g00850 | Cpe-Chr13:7470504 | 2.10E-53 | wgd | |
Cpe10g00881 | Cpe-Chr10:4961166 | Cpe13g00850 | Cpe-Chr13:7470504 | 2.39E-44 | wgd | |
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe16g00602 | Cpe-Chr16:6669904 | 4.92E-46 | wgd | |
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe19g00362 | Cpe-Chr19:3293086 | 3.89E-33 | wgd | |
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe03g00124 | Cpe-Chr3:627920 | 3.53E-42 | wgd | |
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe05g00913 | Cpe-Chr5:6006866 | 9.93E-48 | wgd | |
Cpe13g00850 | Cpe-Chr13:7470504 | Cpe08g01160 | Cpe-Chr8:8615889 | 1.81E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50444 | PF02701 | zf-Dof | 1.30E-30 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00850 | - | - | cmo:103498163 | 430.639 |