Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00900 ATGGAGAATCCTTCAGAAAAAAAATATCCAGTGAATGCCAAGGATTATGACTTACGTGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTATACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTTGATGGTATTCGGCGTGAGGTTCAAACAATGACTCTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACTACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATCCGGAAGGTTTTGAAGAGACTGTTATAGCTACCTTACTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACAGTGAAATTAGCTGATTTTGGAGTCTCGGCGGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCCAAATACCCACCAATGAAAGTTTTGCTTATGACACTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCCAAGGCAAAAGAGGCTGATCTTCTGGTACAGAATAAGGCTTTGTATGGGGATAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTGAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACATAGAAGACCTAGATGTACATACAACAAAGCAAAGAAACCAGAATAATGATTTTAGTTTTCCAGTAGAGGGTTCATCTCTTGAAAGGCTGAATCACCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGCTCCCTTGCTTCTTTTCCTGTAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTATGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGCTCACTAATTTCTGACAATGCTGTCTCTCCTAAAAAGATTATTGTCGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACGTTTCATCTGTCGAGGATACATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTTAAAGTGACTTCAGCAGAACTTAGTCCGAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACGGTAAGTCCAACATCCATGAACCTCACACCTGCTCTACTCCTTCCATCGATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAACATCTGGCAAGAATCCAGATGTATCAGAGACGGTCACCAGTGACCTTCTGCAGGCTACTTCATCTAATGATAGTTTCAATGTTGACCAGACACCACCGGCTACCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCGTCTTGTTGAAGAATTAGAGGAGCAGAAGTTGAAAAATGCCGAGTTCGAAAGACACATGATTTCTATGCAAAATAAAGAGAAAACATAA 1881 42.16 MENPSEKKYPVNAKDYDLREEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHYLWVVMPYMSGGSCLHIMKSAYPEGFEETVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNQNNDFSFPVEGSSLERLNHPTAAASQEDGFSDLHDLESSLASFPVKPLEALKDCFDIYEDISTDSVWPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTVSPTSMNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQTSGKNPDVSETVTSDLLQATSSNDSFNVDQTPPATLRERELQSQVVHLQQRIDRLVEELEEQKLKNAEFERHMISMQNKEKT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7689434 7701521 - Cp4.1LG13g08930.1 Cpe13g00900 480098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00900 626 Pfam Protein kinase domain 16 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00900 626 ProSiteProfiles Protein kinase domain profile. 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00900 626 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cpe13g00900 626 Coils Coil 582 623 - -
Cpe13g00900 626 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cpe13g00900 626 Gene3D Transferase(Phosphotransferase) domain 1 97 316 - -
Cpe13g00900 626 SUPERFAMILY Protein kinase-like (PK-like) 7 238 IPR011009 -
Cpe13g00900 626 MobiDBLite consensus disorder prediction 392 407 - -
Cpe13g00900 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 247 624 - -
Cpe13g00900 626 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 248 - -
Cpe13g00900 626 SMART serkin_6 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00900 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 247 624 - -
Cpe13g00900 626 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 248 - -
Cpe13g00900 626 MobiDBLite consensus disorder prediction 382 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02349 Cpe13g00900 CCT
Cpe01g02349 Cpe13g00900 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01498 Cpe-Chr3:11812109 Cpe13g00900 Cpe-Chr13:7689434 8.76E-86 dispersed
Cpe08g00913 Cpe-Chr8:7182865 Cpe13g00900 Cpe-Chr13:7689434 5.02E-147 dispersed
Cpe09g00224 Cpe-Chr9:1284728 Cpe13g00900 Cpe-Chr13:7689434 2.25E-52 dispersed
Cpe13g00900 Cpe-Chr13:7689434 Cpe14g01014 Cpe-Chr14:8545214 7.89E-109 dispersed
Cpe01g02349 Cpe-Chr1:19680058 Cpe13g00900 Cpe-Chr13:7689434 0 wgd
Cpe13g00900 Cpe-Chr13:7689434 Cpe03g00565 Cpe-Chr3:3360813 6.88E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62804 PF00069 Pkinase 3.20E-50 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00900 K08835 - jre:108997111 873.618