Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00906 | ATGAAAGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT | 603 | 45.44 | MKGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEIQNGVQDLYDCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7736009 | 7737153 | + | Cp4.1LG13g09020.1 | Cpe13g00906 | 480104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00906 | 201 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 2 | 136 | - | - | |
| Cpe13g00906 | 201 | SMART | exoiiiendus | 29 | 165 | IPR013520 | - | |
| Cpe13g00906 | 201 | Pfam | Exonuclease | 54 | 131 | IPR013520 | - | |
| Cpe13g00906 | 201 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 137 | 201 | - | - | |
| Cpe13g00906 | 201 | PANTHER | OS02G0709000 PROTEIN | 137 | 201 | - | - | |
| Cpe13g00906 | 201 | SUPERFAMILY | Ribonuclease H-like | 43 | 151 | IPR012337 | - | |
| Cpe13g00906 | 201 | PANTHER | OS02G0709000 PROTEIN | 2 | 136 | - | - | |
| Cpe13g00906 | 201 | Gene3D | - | 28 | 162 | IPR036397 | GO:0003676 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g02353 | Cpe13g00906 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00008 | Cpe-Chr5:36020 | Cpe13g00906 | Cpe-Chr13:7736009 | 6.20E-45 | dispersed | |
| Cpe13g00906 | Cpe-Chr13:7736009 | Cpe19g00641 | Cpe-Chr19:5174733 | 1.95E-09 | dispersed | |
| Cpe13g00906 | Cpe-Chr13:7736009 | Cpe01g02353 | Cpe-Chr1:19714336 | 8.17E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00906 | - | - | csv:101218614 | 332.413 |