Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00908 ATGATGTCGGACGGATTGATCTTCAACCGATCTCCAGGTCACGCCAACATGCTGTTTTTCGGGAGTGGCGATTCCATTCTTCGAGGATCATGTTTCACGAAGGGGATGGAGGAAAATTCGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTCGATGATGACTACTACGATGACCAGCCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTTGTTCTAGCTACGACTTTATGGCCAAGGAGAATGAAAGACTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAAATCCGAGCCAATTCTGGAAGATCAACTCCTTGTTTCTGTTGAGCAACACAATATGAAGATTGATGACCATCATAGTTGCAGGAGCAATGGAAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCATACCTCCTGAGCAGTGACTACGATGGCTGTGTTTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAGGATGTGAGTGATGACGGTCAGGGCTACTTCTCGGATGTTTATACAGCAGCCGATCAGCAGACTCACGAGGCAGAGCCATTGACCTGGTGGGACTGGTCGTTGTAA 834 48.32 MMSDGLIFNRSPGHANMLFFGSGDSILRGSCFTKGMEENSKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFCSSYDFMAKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQLLVSVEQHNMKIDDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSSDYDGCVLPVFGVNSEEEDVSDDGQGYFSDVYTAADQQTHEAEPLTWWDWSL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7748511 7751543 + Cp4.1LG13g08820.1 Cpe13g00908 480106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00908 277 SMART HOX_1 62 123 IPR001356 GO:0003677
Cpe13g00908 277 CDD homeodomain 64 120 IPR001356 GO:0003677
Cpe13g00908 277 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Cpe13g00908 277 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Cpe13g00908 277 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Cpe13g00908 277 MobiDBLite consensus disorder prediction 42 62 - -
Cpe13g00908 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 260 IPR045224 GO:0003700
Cpe13g00908 277 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Cpe13g00908 277 Coils Coil 139 166 - -
Cpe13g00908 277 SUPERFAMILY Homeodomain-like 47 121 IPR009057 -
Cpe13g00908 277 Gene3D - 57 125 - -
Cpe13g00908 277 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Cpe13g00908 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 260 - -
Cpe13g00908 277 Pfam Homeodomain 64 117 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02355 Cpe13g00908 CCT
Cpe03g00557 Cpe13g00908 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00672 Cpe-Chr1:3928387 Cpe13g00908 Cpe-Chr13:7748511 6.02E-25 dispersed
Cpe10g00594 Cpe-Chr10:3485883 Cpe13g00908 Cpe-Chr13:7748511 2.08E-08 dispersed
Cpe13g00908 Cpe-Chr13:7748511 Cpe20g00203 Cpe-Chr20:1171178 6.79E-42 dispersed
Cpe01g02355 Cpe-Chr1:19722842 Cpe13g00908 Cpe-Chr13:7748511 3.99E-148 wgd
Cpe13g00908 Cpe-Chr13:7748511 Cpe03g00557 Cpe-Chr3:3293854 4.45E-79 wgd
Cpe13g00908 Cpe-Chr13:7748511 Cpe04g00557 Cpe-Chr4:5986887 5.49E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50450 PF00046 Homeodomain 4.60E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00908 K09338 - csv:101210106 449.899