Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00910 ATGGCCAGGATTTGGGTCGGTTTTGCTCTCGTTTTTGTTCTTCTTTTTGGTGGGGTTTCTTCCGCTTCAGCTACGCCTCCTGCAAAAATTGTTCGTGGGGTTCTTTCTAATGTGGTTTCTTCTCTTGTGAAGAGGTTATGGTCGATGAAATCCAGCGCCAAAACTGCTGTTTCCAGCCGTTCGATGATGAAATTTGAGAGTGGATATACCGTTGAGACGGTGTTCGATGGAAGTAAGCTGGGAATTGATCCATATTCGGTTGAGGTATCGCCTAGTGGGGAGCTTTTGATCTTAGATGCTGAAAACAGCAACATCTATAAGATCTCTATGCCATTGTCTCGATTTAGCAGGCCTAAGCTGGTTTCGGGATCGGCCGAAGGATACTCGGGACATGTCGATGGTCATCCAAGAGAGGCAAGAATGAACCATCCAAAAGGGTTTACTTTGGATGCAAGAGGAAATGTGTACATTGCTGATACTATGAATATGGCTATCAGAAAGATTAGTGACACAGGGGTTACAACTATTGCTGGTGGAAGATGGAACCAAGGGAATGGTCATATTGATGGTCCAAGTGAAGATGCAAAGTTCTCAAATGATTTTGATGTCGTTTATGTGGGAAGTAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACAGTGCAATTCGAGAGATTGAACTCAACTACGATGATTGCAATACCCAATATGCTGATAGTCTCAACTTGGGGGTTGTATTGCTGGTTGCTGCCGGCTTATTTGGTTACGTGCTTGCGTTGCTCCAACGTAGAGTGCAAGCTATGTTTTCTTCTCCACAGAAGGATCAGGACATAAGAAGTCATCAAATGATGAAAGCTACACCAGTTGCCCCATACCAAAGACCTCCTTTGAAGTCAGTGAGGCCCTCCTTGATTCCAAATGAAGATGAACCAGAGAAACTGGAGGAAGGCATCTTCGGTTCGCTTGGGAGGCTATTTGTCAACAGCGGTTCATCTGTGGCCGATATCTTTGGCGGATTGTTATCTGGGTTTCGAAGGAAGCCTCTCAATAACCAGATCCATCAGCAGTTTCAACCAGTTAACAGACATCCAAATGCTTGGCCCTTGCAAGAAAGTTTTATGATTCCAGATGAAGATGAGCCACCATCCATCGAAGCGAAAACTCCGACAATAAAAAAAACATATCCATTTATGACACAAGACCTCGATCGATCGCACCAGTTCAAGCCAAACAGGAGCTACTTTAATGGGTGGGATAGTGAATTCCATCAACAGCAGCAACAGCAGCAGCAGATACAGCATAATCATCAACAGCAGCATCTACAACATCATCACCAACAGCAGCAGCATATACAACAACAACAACAACATCATCATCAACAGCAGCAGCATAATTACAATCGACAATATTCAGCTGGCCCAACAACCTACTATGAGAAGAGTTGTGAGACAAGCGAAATTGTGTTCGGTGCAGTTCAAGAGCAAGATGGACGTCGTGAAGCAATGGTCATCAAGGCTGTTGATTATGGAGATCCGAGATATAACCATCACAACATTCGTGCTCGATACAACTATACTGGTAACCCCAACTCTTATTGA 1596 44.05 MARIWVGFALVFVLLFGGVSSASATPPAKIVRGVLSNVVSSLVKRLWSMKSSAKTAVSSRSMMKFESGYTVETVFDGSKLGIDPYSVEVSPSGELLILDAENSNIYKISMPLSRFSRPKLVSGSAEGYSGHVDGHPREARMNHPKGFTLDARGNVYIADTMNMAIRKISDTGVTTIAGGRWNQGNGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNSAIREIELNYDDCNTQYADSLNLGVVLLVAAGLFGYVLALLQRRVQAMFSSPQKDQDIRSHQMMKATPVAPYQRPPLKSVRPSLIPNEDEPEKLEEGIFGSLGRLFVNSGSSVADIFGGLLSGFRRKPLNNQIHQQFQPVNRHPNAWPLQESFMIPDEDEPPSIEAKTPTIKKTYPFMTQDLDRSHQFKPNRSYFNGWDSEFHQQQQQQQQIQHNHQQQHLQHHHQQQQHIQQQQQHHHQQQQHNYNRQYSAGPTTYYEKSCETSEIVFGAVQEQDGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7759641 7763609 + Cp4.1LG13g08830.1 Cpe13g00910 480108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00910 531 Gene3D - 39 226 IPR011042 -
Cpe13g00910 531 MobiDBLite consensus disorder prediction 400 464 - -
Cpe13g00910 531 PANTHER POTASSIUM TRANSPORTER 1 444 - -
Cpe13g00910 531 PANTHER POTASSIUM TRANSPORTER 433 530 - -
Cpe13g00910 531 PANTHER - 1 444 - -
Cpe13g00910 531 PANTHER - 433 530 - -
Cpe13g00910 531 MobiDBLite consensus disorder prediction 408 436 - -
Cpe13g00910 531 MobiDBLite consensus disorder prediction 443 464 - -
Cpe13g00910 531 SUPERFAMILY NHL repeat 69 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00910 - - - csv:101209861 901.353
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02359 Cpe13g00910 CCT
Cpe01g02359 Cpe13g00910 ECH
Cpe03g00552 Cpe13g00910 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00601 Cpe-Chr1:3468372 Cpe13g00910 Cpe-Chr13:7759641 9.79E-78 transposed
Cpe02g00663 Cpe-Chr2:4173749 Cpe13g00910 Cpe-Chr13:7759641 3.21E-78 transposed
Cpe01g02357 Cpe-Chr1:19733159 Cpe13g00910 Cpe-Chr13:7759641 0 wgd
Cpe13g00910 Cpe-Chr13:7759641 Cpe03g00552 Cpe-Chr3:3242595 1.56E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g750 . . . . Bpe13g00490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0649 . . . . . . . . . . . . . . Cmo04g02846 . . . . . Cpe13g00910 . . . . . . . . . . . . . . . . . Chy09g00326 .
Vvi14g1388 . . . . . . . Bma13g00521 Cmo14g00646 . . Cma14g00636 . Car14g00579 Sed08g0617 Cpe03g00552 Cpe13g00910 Bhi06g00494 Tan11g0602 Cmetu09g1390 . . . Lcy10g1939 Cla10g01373 Cam10g1236 Cec10g1457 Cco10g1429 Clacu10g1432 Cmu10g2200 Cre10g1582 . . Cone2ag0142 Cone16ag0913 Lsi02g01553 Csa05g02912 Chy04g01476 Cme04g01909 . . . . Bpe09g00486 . . . . Cmo04g02849 Cmo15g00337 . Cma15g00325 Car04g02623 Car15g00310 . Cpe01g02359 Bhi11g01669 . . . Hepe02g1866 . . Cla09g01843 Cam09g1935 Cec09g2000 Cco09g2094 . . Cre01g0569 . Csa03g03913 Chy09g00326 Cme09g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005531 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 3 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00910 Cpe_Chr13 FPKM 348.697662 361.387054 242.014862 247.94606 169.037949 167.976288 166.175278 228.701813 243.890091 224.444687