Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00918 ATGGCTCCGAGCTCTGTTGTTGTTACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCCTTGTTGCTTCCGGAGAAGCAGAAGGCTGCGAGTCCCAAGCAGCTCACGTGGGTTCTTCTTCTCAAAGCCCATAGAGCTCTGTTTTTCTTCTCGTGGATGGCGATGACTATGAAGGCGGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGTAAGTTATATAGATTCATTAAGGCGTTTCTTGCGATTTCAATTACGGGTTTGATCGTCGAAGTTGTTGCTCATTTCAAAAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAAGTTCATGGGATTATTCAATGGTTTTACGTCTCGTGGCTTTCGTTTCGTGTTGATTACATTGCGCCAATGGTTCTCATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTCTGCTTCGGCTGCTTTTGGATCAAATACAAGAAAATCAAACCCACGATTCAAGATAACGCTTATGATTTGGAAGATACTTCGAATTTTCCTTTGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCGCAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTATCATGGAATGAAAAGGGTGCTAATATTGTTTATCGACATAGATTGATCCGAACTGGGTACAAAGCTGGGAATCTTCAGTCCGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTCATAGCTATTTTAGATGCAGATTTCCAGCCCAACCCAGATTTCCTTAAGCTAACAATCCCTCATTTCAAGGGAAATCCTGAGGTGGGGCTTGTCCAAGCTCGTTGGGCGTTTGTTAACAAAGAAGAAAACTTGCTTACCAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTTGAGCAGCAAGTTAATGGGGTTTTTCTCAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAGCGAAAGCGCTTGAGGAATCCGGTGGCTGGCTCGAGCGCACGACGGTGGAGGACATGGATATCGCAGTTCGAGCACACTTGGAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATTACTTCAAAGATATCAATATGGAAGAAGACGAACTTGATATTCCTGTTCTTCCTCTTAAGAAAACTCATACTTCCCTTTTACTCCTTCACTTTGTTCTGCATAATTCTTCCATTAACAATGTTCATTCCAGAAGCAGAGTTGCCTCTGTGGGTAATCTGCTACATCCCAGTGTTCATGTCCTTACTAAACATTCTCCCATCCCCAAAATCCTTCCCTTTCTTGATCCCATATCTCTTGTTTGAGAACACCATGTCAGTGACAAAGTTCAACGCCATGATTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGGTCGTGACAAAGAAAACAGGACGATCATCAGAATCCGACTTCCTAGCATTAGCCGAACGAGAGTCGAAAACATCGAACGAGGATAAGATTCTAAGGAGACATTCAGAGTCAGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTGGCTCTTGCCTTTCTGCTGCTCACTGCAGCAGCCAGAAGCTTGCTGTCAGCTCATGGAGTTCACTTCTACTTCTTGCTGTTCCAAGGGTTGTCGTTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 1998 43.44 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWMAMTMKAVFASVKKRIAHADINEEDSKSRKLYRFIKAFLAISITGLIVEVVAHFKKWNLRMIQPLELEVHGIIQWFYVSWLSFRVDYIAPMVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDNAYDLEDTSNFPLVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGANIVYRHRLIRTGYKAGNLQSAMACDYVKDYEFIAILDADFQPNPDFLKLTIPHFKGNPEVGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLEGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMISGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKTSNEDKILRRHSESGLELLSKLNQQEKQMASKKKRNKVYRKELALAFLLLTAAARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7791640 7794489 - Cp4.1LG13g08730.1 Cpe13g00918 480116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00918 665 Pfam Glycosyl transferase family group 2 295 500 IPR001173 -
Cpe13g00918 665 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 420 IPR029044 -
Cpe13g00918 665 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 664 - -
Cpe13g00918 665 SUPERFAMILY Nucleotide-diphospho-sugar transferases 203 503 IPR029044 -
Cpe13g00918 665 PANTHER - 2 664 - -
Cpe13g00918 665 Coils Coil 599 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00918 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1226.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02362 Cpe13g00918 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00399 Cpe-Chr6:2254365 Cpe13g00918 Cpe-Chr13:7791640 0 dispersed
Cpe12g01105 Cpe-Chr12:9147846 Cpe13g00918 Cpe-Chr13:7791640 1.52E-62 dispersed
Cpe13g00918 Cpe-Chr13:7791640 Cpe17g01126 Cpe-Chr17:8546138 1.39E-69 dispersed
Cpe01g02362 Cpe-Chr1:19755635 Cpe13g00918 Cpe-Chr13:7791640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00918 Cpe_Chr13 FPKM 0.0 2.39967 1.181271 0.0 0.0 0.0 0.288333 0.0 0.0 0.0