Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00921 ATGGAATTTCAGGAGGGTTTGATGAAGTTCATGATCCATAGACACATCAAACACAACTGGGTTTTGGAGAAGAATTCTCCACCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTCGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCCCCATTTCCTTCGAAACCTCCCCAATCGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGATCCTGTAATTGTCTCCTCTGGTCACACTTTTGAAGCCGCCTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTGTTAGATGGTTCCAACCCGGATTTCTCCTCTGTTATCCCGAATCTGGCTCTCAAATCTACTATTCTCAATTGGTGTAAGAATTCCTCTTCTGAATCCCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTCAATTCATGGCGGCCCACACCAAAAGCGATGAGGAATTGATTCAAGCGATTGCGGAGAATCCCGTGGTTCGATTCAACCACGCCGCCACCGAAGTCACTCGTCGGACCTCTCATTTCCACTCGAGCTCCGATGAATCTGTAGGCGCCGCCGTTCCAACTCTGCCTCTTCCTCTCGCGACAAGGCCGAGTTGTTGTTCTTCGTCTTCTTCCTCTGACATCGAGGTAATCAGTGATCTGAGCTTGCCCGAGGAAGAAGAGATCTTCGCGAAGCTGAAAAGCTCTCAGGTTATTGAGATTGAAGAGGCTGTGACTGCGCTGAGAAAAATCACAAGAACTCGAGAGGATTCTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTTCTCTGCGATCTCTCATCGTCTCGAGGTACACTGGCGTTCAGGTGAATTCAGTTGCAGCTCTTGTAAATCTGTCTTTAGAGAATTTGAACAAGGTTAAGATTGTAAGGTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCACCGGAGGTTCAAGAACATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGACGACAACAAAACCGCGATCGGCGTTTTGGGTGCTCTGCCGCCATTGATACGGCTGTTGGTATCCGATTCAGAGCAAACACGGCACGACTCGGCTCTTGCTCTTTATCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTCTTTCTCGGGATGGTGAAATCCGGCCATATGGCCGGCCGTATTTTACTGATATTGTGTAATTTAGCTGCTTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGTGCAGTGGAGTGCTTGGTGGGGATGTTGAGGGAGAACGAGCTGGACACTGAGTCGACTCGGGAGAGTTGTGTGGCAGTCCTGTTCGGACTGAGTTACGGCGGTTTGAGGTTTAAGGGTCTGGCAAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTAGAGAAAAATGGAAGTGAGAGATCAAAAGAAAAGGTGAAGAGAATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTCGACTCGGGTTGTTTCGGCAGCCGAACTCGGTGTCGAATCGGTGCCGGAATGGACAGATCCACCGCGAACTCGTCGGAGTTCTGA 1659 49.79 MEFQEGLMKFMIHRHIKHNWVLEKNSPPVAVSEITSSPRRKWRIFNRSSSSPFPSKPPQSKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSNPDFSSVIPNLALKSTILNWCKNSSSESPKPLDFSSAEKLVRQFMAAHTKSDEELIQAIAENPVVRFNHAATEVTRRTSHFHSSSDESVGAAVPTLPLPLATRPSCCSSSSSSDIEVISDLSLPEEEEIFAKLKSSQVIEIEEAVTALRKITRTREDSRVHLCSPLILSSLRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDTESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRIGAGMDRSTANSSEF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7813731 7815389 - Cp4.1LG13g08720.1 Cpe13g00921 480119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00921 552 SUPERFAMILY RING/U-box 57 135 - -
Cpe13g00921 552 SUPERFAMILY ARM repeat 242 497 IPR016024 -
Cpe13g00921 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Cpe13g00921 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Cpe13g00921 552 SMART arm_5 346 386 IPR000225 GO:0005515
Cpe13g00921 552 SMART arm_5 426 469 IPR000225 GO:0005515
Cpe13g00921 552 SMART arm_5 264 304 IPR000225 GO:0005515
Cpe13g00921 552 SMART arm_5 305 345 IPR000225 GO:0005515
Cpe13g00921 552 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Cpe13g00921 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 353 IPR000225 GO:0005515
Cpe13g00921 552 CDD RING-Ubox 68 111 - -
Cpe13g00921 552 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 541 - -
Cpe13g00921 552 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Cpe13g00921 552 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Cpe13g00921 552 Pfam Armadillo/beta-catenin-like repeat 308 344 IPR000225 GO:0005515
Cpe13g00921 552 Pfam Armadillo/beta-catenin-like repeat 347 385 IPR000225 GO:0005515
Cpe13g00921 552 Gene3D - 233 508 IPR011989 -
Cpe13g00921 552 PANTHER U BOX DOMAIN-CONTAINING 39 541 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02363 Cpe13g00921 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01536 Cpe-Chr4:12057760 Cpe13g00921 Cpe-Chr13:7813731 1.26E-171 dispersed
Cpe13g00921 Cpe-Chr13:7813731 Cpe19g00930 Cpe-Chr19:6686208 7.55E-36 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe13g00921 Cpe-Chr13:7813731 0 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe18g00826 Cpe-Chr18:7657630 8.35E-170 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe20g00225 Cpe-Chr20:1295346 2.15E-155 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe09g01045 Cpe-Chr9:9139986 5.86E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00921 - - cmax:111489531 1026.16