Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00922 ATGAGAAACGCCAGCTGGAATAGTGCAAATCTAGGGGCGGGTGAAATCCGGTACCCGGCCCGACAAGTTTTTGTGCGGGGACGGTTGCTTCTAAGTTCTAAACCCCACCCGGATGATGCTGCGGCCACTGCCCGTTGGTTGGTTTCTCAGAATTCATGGGGAATCTTGAGCACCATCTCAAGTGATTTCGGGGGAGCGCCTTTTGGGAATGTGGTTTCGTTTAGTGATGGGCCACCGGGCAAAGGTCGAGGCACGCCATATTTCTACTTAACTACTCTTGACCCAACTGCAAGATATGCAATCTCAGATGAGAGGGCTTCATTTACGCTAAGTGAGTACCCTATTGGCACTTGTGGCAAGATAGATCCCGAAAACCCGACTTGCGCGAAGATTACGTTGATCGGGAAGCTGAGGCAGGTGGATCCTAATTCCAAAGAAGTCGAGTTTGCTAAAACGTCCTTGTTCTCAAAGCATGCAGAGATGAAGAAGTGGCCTAAGGATCACGACTTTCGGTTCTACAAATTAGTAATTGAGAACATATTCTTGATCGATTGGTTCGGTGGGCCGAAGCCTCTTACAGTCGATCAATATCTACATTTCAAATTATTTCTTCTCTTCCTCGTTTTTCGCGGCTTTGTCCTCATGATTCCACAAGCTTCCTCGTTCAATATCGCCGTTCCACTCTCCGGTTCCCCCCTCGGCCACTCCCGTCATCGACATGTCGTGCGAGCTCAAGCGGAACCGTCCGAGAAGTCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGTAAATCAGGAACGTATTTCTGTGTGGACAAGGGGGTCACTGCGGTTGTAATCAAGGGACTAGCAGATCACAAAGATACATTGGGTGCACCACTTTGTCCTTGCCGGCATTATGATGACAAACCTGCTGAAGTTGCACAAGGTTTTTGGAACTGTCCATGTGTTCCAATGAGAGAGAGGAAAGAGTGTCACTGCATGCTTTTCCTGACTCCAGAGAACGACTTTGCAGGCACTGATCAGGCAATCTCCTTGGAAGATATCAGGGCAACAACAGCAAACATATTTTTACGGGTTTCGTTCCTGGAGATGTCGAGGCCCCAAGTCACCATCACTCTCGGGCGCTCTGGTCAGATGGTAAAGAGAGGAGGTTCTGACTTCGCTCAATCGAATATTGATTCTGGACCAGTGCCAAGAAGAAAACGATATATTGAGAGATCAGCAGATAATGCAGAGGATTTGTTCTCATCCACGAATAAGCGAGTTGGTCAAAATGATCTGCGCTTGAAACTTATGCGCAAAAATCAATCCAAGAAAATTGGTCTTGGCGAAGAACACTCAAGGGTGGAAATACACCATCAATTATCAAAAAATTATCTGCCCTCAACTAGTGGAGATGTAATACATCGTAGGCATGAATTTAGAGGGAGTAATCTTATAAGGCAAACACATTACAGAAAAAGTGCCGATGATCTATACCTAGAACATTCACAAAGGAAAAGTACAGTATCATATGTTGACAGGATGAGAGTTAGATCCCCAGATGGGATCATGAAGAGCTCCATGGGGCTTTCACCTCCTAGATACAATGATGAGTTTAGGAGGATCTCATCTATGAGGGAAGCTGATCGTTCTAGAGATGAATGGTTTTTTAGGAACAGCGTTGCTGATAGTTATAGGTCTGTAGACTCCGCACCTGCGAAAATGAAAGCCACCCTCCCTGTGTCTGGCAAGGCAGTTAAGGATCTCACAGCAATAAGTGGCAGCATGCAGAGAAGTTCCGCAATGGGAGAGGGTACTCTTTCTGTTGCTGGCTTGTTGAATTCGCTTGGTTTGGGGAAATATGTCATTCATTTTCAGGCAGAAGAAATTGATATGACAGCTTTGAGACAGATGGGAGACAGGGATCTTAAAGAGTTGGGGATACCCATGGGACAAGAGAGAAGCGTGTGGACTATTGTCTTTGGCTTTCAGCAGAACGAGAAGCTAACAGTTAAAAAGAGAGACTATTTGACTTTAGTTGATGTGATCGCTTTGGGGTATTTAGCTTAG 2061 45.9 MRNASWNSANLGAGEIRYPARQVFVRGRLLLSSKPHPDDAAATARWLVSQNSWGILSTISSDFGGAPFGNVVSFSDGPPGKGRGTPYFYLTTLDPTARYAISDERASFTLSEYPIGTCGKIDPENPTCAKITLIGKLRQVDPNSKEVEFAKTSLFSKHAEMKKWPKDHDFRFYKLVIENIFLIDWFGGPKPLTVDQYLHFKLFLLFLVFRGFVLMIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGTDQAISLEDIRATTANIFLRVSFLEMSRPQVTITLGRSGQMVKRGGSDFAQSNIDSGPVPRRKRYIERSADNAEDLFSSTNKRVGQNDLRLKLMRKNQSKKIGLGEEHSRVEIHHQLSKNYLPSTSGDVIHRRHEFRGSNLIRQTHYRKSADDLYLEHSQRKSTVSYVDRMRVRSPDGIMKSSMGLSPPRYNDEFRRISSMREADRSRDEWFFRNSVADSYRSVDSAPAKMKATLPVSGKAVKDLTAISGSMQRSSAMGEGTLSVAGLLNSLGLGKYVIHFQAEEIDMTALRQMGDRDLKELGIPMGQERSVWTIVFGFQQNEKLTVKKRDYLTLVDVIALGYLA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7817945 7828752 - Cp4.1LG13g08810.1 Cpe13g00922 480120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00922 686 SUPERFAMILY SAM/Pointed domain 604 661 IPR013761 -
Cpe13g00922 686 Pfam SAM domain (Sterile alpha motif) 605 645 IPR001660 GO:0005515
Cpe13g00922 686 Gene3D - 600 666 IPR013761 -
Cpe13g00922 686 SUPERFAMILY FMN-binding split barrel 37 200 - -
Cpe13g00922 686 Pfam Ferredoxin thioredoxin reductase catalytic beta chain 253 352 IPR004209 GO:0016730
Cpe13g00922 686 PANTHER - 367 651 - -
Cpe13g00922 686 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 367 651 - -
Cpe13g00922 686 SUPERFAMILY Ferredoxin thioredoxin reductase (FTR), catalytic beta chain 250 354 IPR036644 GO:0016730
Cpe13g00922 686 Pfam Pyridoxamine 5'-phosphate oxidase 35 198 - -
Cpe13g00922 686 Gene3D - 38 202 IPR012349 -
Cpe13g00922 686 Gene3D Ferredoxin thioredoxin reductase catalytic beta subunit 244 359 IPR036644 GO:0016730
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00922 K25476 CREG; protein CREG - csv:101207417 457.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02365 Cpe13g00922 CCT
Cpe07g00639 Cpe13g00922 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00639 Cpe-Chr7:4543529 Cpe13g00922 Cpe-Chr13:7817945 3.85E-30 dispersed
Cpe11g00731 Cpe-Chr11:5629727 Cpe13g00922 Cpe-Chr13:7817945 1.72E-32 dispersed
Cpe12g01087 Cpe-Chr12:9035690 Cpe13g00922 Cpe-Chr13:7817945 2.23E-12 dispersed
Cpe13g00922 Cpe-Chr13:7817945 Cpe17g01109 Cpe-Chr17:8410455 6.87E-13 dispersed
Cpe01g02365 Cpe-Chr1:19771618 Cpe13g00922 Cpe-Chr13:7817945 2.19E-91 transposed
Cpe01g02364 Cpe-Chr1:19767081 Cpe13g00922 Cpe-Chr13:7817945 9.82E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
Vvi14g1418 . . Bda01g01256 . Bpe02g01480 . . . . . . . . . . . Cpe13g00922 Bhi06g00474 . . . Hepe02g3129 . Lcy10g1955 . . . . . . . . . . Cone16ag0899 . Csa05g02929 . . . . . . . . . . . Cmo04g02858 . Cma04g02727 . Car04g02631 Car15g00298 . Cpe01g02365 . . . . . . . Cla09g01822 Cam09g1919 Cec09g1984 Cco09g2078 . . Cre01g0587 . . Chy09g00310 Cme09g00331
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003022 2 4 1 0 2 0 4 0 0 2 1 0 1 2 2 2 0 3 3 1 2 2 2 1 2 1 2 7 2 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00922 Cpe_Chr13 FPKM 20.52564 18.568783 15.15088 15.255337 14.550562 20.467842 13.086069 16.996887 25.146032 21.915163