Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00923 AAAGACGAACCCAATTCTCATACGGACGCAATCGACGAGGCCTTGGAGTCATCCATTAAATCATATGAGAAATTCTTCAAGCTGAACCGGGGTTCTGGACAAGGAGACGCTAGATCAAACGTGGAAGCCGCGCTGTGGGGTAACAAGTCATGGCCGGTTGAGAAGAGGCACCTGACGTACGGATTCATCCACAATTACCCACCAGAGCAGGTGGGTCGAGTGATGCGAGGCTTTGAGACATGGGAAGCCAACACCCATTTTACATTCTCCCGGTCAGCGAGGGTCCAAACGGCTGACATACTGTCTAGCTTGGAGAAAGAGGCGTGGGGAAGGGGTGTTCCTTTTTTACGGTGTGACCTGGAGTCGGTGGCGTTGCATGAGATAGGACATGCTCTTGGGCTTGCCCGCTCTAACATTTGCCGTCATGGTAGCCGCAAGGGCGACAACAGGAAAGGCATCCATGGCGTCAAGGCTTACCTTCAACGCTACGGCTACTACGTGACCCAAAACGAAACCAATTCTCAAACAAATGCATTCGACGAGGCCTTGGAGGAATCAATTAAATCATACCAGAAATTCTTCAAGCTTAACGTGAGCGGGGCTTTGGACAAGGAGACGCTGGATCAAATGGCGAAGCCTCGATGTGGGGTGTCGGATAATTTCACGACGGCGGGTGGGAAGCTGGGTGGTTCTTATTATGCTTTCTTTCCAGGACGCCGCATTTGGGCGCCTGAAAAGAGGCATTTAACGTACGGATTTATCCACGATTACCCATCCAAGTATGTGCCTCAAGTGATGCGGGCTTTTGCCACATGGGAAGCCAACACCCATTTTACATTCTCCCAAGCTGTGGGAGGCCAAACGGCTGACATAGTTTTAAGCTTCGAGAGAAGGGATCATGGAGATGGGCATCCGTTCGATGGACTTGGGGGAGCATTGGCCCATTGTTTTGGGCCTATTGATGGGAGAGTCCACTTTGACGCCCAGGAGATTTGGGATTGGGGTATTCGTATATTACAGAATGACTTGGAGTCCGTGGCATTGCATGAGATTGGGCATGCCCTTGGGCTTGGCCATACCGACGTTCAAGATGCCGTCATGTGGCCTACCATGAACTTTGGGTCCAGGAAGACTCGCTTGCATGATGATGATATTAATGGTATTCATGCTCTATATGGAAAT 1182 50.59 KDEPNSHTDAIDEALESSIKSYEKFFKLNRGSGQGDARSNVEAALWGNKSWPVEKRHLTYGFIHNYPPEQVGRVMRGFETWEANTHFTFSRSARVQTADILSSLEKEAWGRGVPFLRCDLESVALHEIGHALGLARSNICRHGSRKGDNRKGIHGVKAYLQRYGYYVTQNETNSQTNAFDEALEESIKSYQKFFKLNVSGALDKETLDQMAKPRCGVSDNFTTAGGKLGGSYYAFFPGRRIWAPEKRHLTYGFIHDYPSKYVPQVMRAFATWEANTHFTFSQAVGGQTADIVLSFERRDHGDGHPFDGLGGALAHCFGPIDGRVHFDAQEIWDWGIRILQNDLESVALHEIGHALGLGHTDVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7829773 7832292 + Cp4.1LG13g08880.1 Cpe13g00923 480121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00923 394 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 235 393 - -
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 107 139 - -
Cpe13g00923 394 Gene3D Collagenase (Catalytic Domain) 139 394 IPR024079 GO:0008237
Cpe13g00923 394 SMART col_5 238 394 IPR006026 GO:0006508|GO:0008237|GO:0008270
Cpe13g00923 394 PRINTS Matrixin signature 380 393 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cpe13g00923 394 PRINTS Matrixin signature 210 223 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cpe13g00923 394 PRINTS Matrixin signature 265 280 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cpe13g00923 394 PRINTS Matrixin signature 346 371 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cpe13g00923 394 PRINTS Matrixin signature 289 317 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 5 115 - -
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 143 392 - -
Cpe13g00923 394 SUPERFAMILY PGBD-like 147 219 IPR036365 -
Cpe13g00923 394 Pfam Matrixin 246 393 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Cpe13g00923 394 CDD ZnMc_MMP 245 393 IPR033739 GO:0008237|GO:0008270
Cpe13g00923 394 Gene3D Collagenase (Catalytic Domain) 1 118 IPR024079 GO:0008237
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 5 115 - -
Cpe13g00923 394 Pfam Putative peptidoglycan binding domain 154 210 IPR002477 -
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 143 392 - -
Cpe13g00923 394 PANTHER MATRIX METALLOPROTEINASE 107 139 - -
Cpe13g00923 394 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 46 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00923 - - - cmax:111489405 415.616
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00092 Cpe13g00923 CCT
Cpe03g00544 Cpe13g00923 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00923 Cpe-Chr13:7829773 Cpe13g00924 Cpe-Chr13:7832473 3.29E-12 tandem
Cpe18g00246 Cpe-Chr18:4140229 Cpe13g00923 Cpe-Chr13:7829773 9.95E-29 transposed
Cpe01g02366 Cpe-Chr1:19776018 Cpe13g00923 Cpe-Chr13:7829773 1.02E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
Vvi14g1421 . . . Bda13g01665 . Bpe14g00203 . . Cmo14g00636 Cmo11g01082 . Cma14g00626 Car11g00893 Car14g00570 Sed11g1958 Cpe03g00544 Cpe13g00923 Bhi06g00470 Tan11g0579 Cmetu09g1403 . Hepe02g3130 . Lcy10g1957 Cla10g01389 Cam10g1219 Cec10g1474 Cco10g1447 Clacu10g1453 Cmu10g2218 Cre10g1599 . . Cone2ag0156 Cone16ag0896 Lsi02g01534 Csa05g02937 Chy04g01491 Cme04g01928 Blo17g00342 . . . . . . Bma02g00382 . Cmo04g02860 . . Cma15g00310 . Car15g00296 Cpe04g00092 . Bhi11g03058 . . . Hepe02g1902 . . Cla09g01820 Cam09g1915 Cec09g1979 Cco09g2071 . . Cre01g0590 . Csa03g03895 Chy09g00308 Cme09g00329
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016451 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00923 Cpe_Chr13 FPKM 20.287853 21.985487 14.833745 16.859198 18.843 18.877457 18.602594 18.918402 19.811146 17.015629