Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00933 ATGGGACTCTGCGGCTCGAAGCCGAAGGGTTGCGTCCGAGGAAGACTGGTTCCGTCGGGGAAGAGGAATCGGAGGCGGAGAAGAAGAAGTATCAAGCGGCGAATTTCCTCTCTGAAGCTTGATTCGCTTTCTACACCTAGTCGCCCTCATTCTACTCCTACATGTGCAGCTAGAGGAAGTGTCGATGCGGCGTGGTTTGATTCTACTTCAGTTCTTGATTCGGAATTCGATGACGAGTTTTATAGCGTTCGTGATGATGTGTTGTCTTTAAATGGCTCTGAGTTCGCATCAAGATTAAGTGTTTCATCTCCAAAGCATCGAAACAATAAGGAACATAATGAAACTACTGCGACAATTCTTGCTAAGAGATCTAGTGATTGCAGAAATGATTTGACCCCCATTTTTGTAGATGAAGTTTCCACAGAGGGTGAAAATGGTAAAGGAGGTGAGGGGGCTGATTGGAATAACTGCGGCCTTCTTCCAAATACTTGTTTGCCATATCTGGCTGCTGCTGGACCCTCACTTGAAAAAAGGAGACAAATCAACCAAGGAACTCCAAATCTAAGGAGAAAAGCATCTTCAAAACTTTCATTTAAGTTAAAGGAAGGACACAATGATCCGATGATATTTTCACCGAGGGCACCTTTACAAAAACCAATTGCTGGCACTTCAGTTCCACACTGTCCAGTAGGGAAGAGAATGCCCAATTGTTGGTCACCTATTGACCCCAGTGTTTTTAAAGTCCGAGGGAAGAACTATTTTAGAGATAAGAAGAAAGAGTTTGCTCAAAATTGTGCTGCCTATTATCCCATTGGAGCTGATGTCTTCTTCTCTCAGAGAAAGATTGATCATATTGCCCGTTTTGTGGAACTTCCGGCCATAAATCCAGCTGGAGATGTCCCTTCTATTCTTGTAGTAAATGTTCAGGTACCACTGTACTCTGCTACAATCTTTCAAGGAGAAAATGACGGTGAAGGAATGAGTGTGGTTATGTACTTTAAGCTGTCCGAGAGTTATTCAAAGGAACTTCCAAATTCTTTCCAAGAACATTTTACAAAATTAATTAATGATGAAGTCGAAAGGGTTAGAGGTTTCCCTATGGATAACATTGTACCATTCAGGGAAAGATTGAAAATTATGGGCCGAGTGGAAAATGTGGAGGATCTTCATTTGAGTGCAGCTGAGAAAAAGCTTATGAATGCGTATAATGAAAAACCTGTCCTCTCACGACCTCAACACGAGTTTTACTTGGGGGAGAAATACTTGGAAATCGATTTGGACATCCACAGATTTAGCTACATCTCAAGAAAAGGTTTTGAAAGTCTTAACGATAGACTGAAGCTATGTATCTTGGATTTTGGCTTGACAATTCAGGGAAACAAGGCAGAAGACTTGCCGGAACACATGTTATGTTGCATTCGGCTAAATGAAATCGACTACTCCAATTATCAGTCATTAGGCATTTAA 1467 41.72 MGLCGSKPKGCVRGRLVPSGKRNRRRRRRSIKRRISSLKLDSLSTPSRPHSTPTCAARGSVDAAWFDSTSVLDSEFDDEFYSVRDDVLSLNGSEFASRLSVSSPKHRNNKEHNETTATILAKRSSDCRNDLTPIFVDEVSTEGENGKGGEGADWNNCGLLPNTCLPYLAAAGPSLEKRRQINQGTPNLRRKASSKLSFKLKEGHNDPMIFSPRAPLQKPIAGTSVPHCPVGKRMPNCWSPIDPSVFKVRGKNYFRDKKKEFAQNCAAYYPIGADVFFSQRKIDHIARFVELPAINPAGDVPSILVVNVQVPLYSATIFQGENDGEGMSVVMYFKLSESYSKELPNSFQEHFTKLINDEVERVRGFPMDNIVPFRERLKIMGRVENVEDLHLSAAEKKLMNAYNEKPVLSRPQHEFYLGEKYLEIDLDIHRFSYISRKGFESLNDRLKLCILDFGLTIQGNKAEDLPEHMLCCIRLNEIDYSNYQSLGI 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7889234 7893761 + Cp4.1LG13g08670.1 Cpe13g00933 480131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00933 488 PANTHER CW14 PROTEIN 1 486 - -
Cpe13g00933 488 PANTHER PLANT/F14N23-31 PROTEIN 1 486 - -
Cpe13g00933 488 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 238 479 IPR009769 -
Cpe13g00933 488 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00933 - - - mcha:111006428 874.389
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01427 Cpe13g00933 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00278 Cpe-Chr1:1589280 Cpe13g00933 Cpe-Chr13:7889234 1.01E-169 dispersed
Cpe13g00933 Cpe-Chr13:7889234 Cpe13g00968 Cpe-Chr13:8070613 8.60E-108 dispersed
Cpe01g02374 Cpe-Chr1:19845501 Cpe13g00933 Cpe-Chr13:7889234 0 wgd
Cpe01g01427 Cpe-Chr1:8570971 Cpe13g00933 Cpe-Chr13:7889234 1.80E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004043 3 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00933 Cpe_Chr13 FPKM 27.635485 29.445772 22.27858 22.795246 50.53125 50.718117 52.367123 28.296509 26.61726 25.262356