Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00941 ATGGCTTCCCCTCACCATTCCCATAGCTTCCTCTTCCAATCCCGCTCCGCCGATCACCACGAATACCTTCCCTCCGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTCCACGATGGGGTCGTCCCGGTGATGATGAAGAGATCGATGTCGTTTTCAGGCATCGAAAATGGATGCGAGGAAGTGAACGGCGACGAGGGGCTATCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGCCTCAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAGCCTGAGAGAAAGATTCAACTGGCCAAAGCCTTGGGGTTGCAGCCTAGACAGGTTGCTATTTGGTTCCAGAACAGAAGAGCCAGATGGAAGACCAAGCAACTGGAAAGAGATTATGAGGTCTTGAAGAAACACTTTGAATCTCTTAAGGCTGACAATGATGTCCTCCAAGCTCAAAACACCAAACTCCATGCAGAGTTATTAGCGTTAAAAACCAAGGACTCGGGCGAGGTGGCAGGCGGCGGGGCCACCATGAACCTAAAGAAAGAAAACGAACGGTGTTGGAGCAGCGACAACAGTTGTGACATCAACCTGGACATCTCAAAGACACAAGCAGCAATAAACGGCGAGGAAGGTGGAAGAGCATGTTGTGAGCCAGGAATCAAAGACCTATTCCCATCGGCGGCGTTCCGATCGGGTGCCATAACGCAGCTGATTCAACGCGGGTCATCCAGGTCAACGGTTGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGTATTGAAGAACAACAACAAAGTGCAGCAGCGGCAGCAGCAGCTGGGTTTTGGCCATGGGGTTCGGATCAAAATTCCCATTTTAATTAA 912 50.33 MASPHHSHSFLFQSRSADHHEYLPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGIENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYEVLKKHFESLKADNDVLQAQNTKLHAELLALKTKDSGEVAGGGATMNLKKENERCWSSDNSCDINLDISKTQAAINGEEGGRACCEPGIKDLFPSAAFRSGAITQLIQRGSSRSTVDHPQVIQEESFSQMFNGIEEQQQSAAAAAAAGFWPWGSDQNSHFN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7932558 7933722 - Cp4.1LG13g08590.1 Cpe13g00941 480139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00941 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 303 IPR045224 GO:0003700
Cpe13g00941 303 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cpe13g00941 303 Gene3D - 77 150 - -
Cpe13g00941 303 SMART HOX_1 79 140 IPR001356 GO:0003677
Cpe13g00941 303 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Cpe13g00941 303 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Cpe13g00941 303 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Cpe13g00941 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 303 - -
Cpe13g00941 303 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Cpe13g00941 303 Coils Coil 135 169 - -
Cpe13g00941 303 CDD homeodomain 81 137 IPR001356 GO:0003677
Cpe13g00941 303 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677
Cpe13g00941 303 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02383 Cpe13g00941 CCT
Cpe01g02383 Cpe13g00941 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00941 Cpe-Chr13:7932558 Cpe19g00748 Cpe-Chr19:5769840 5.72E-39 dispersed
Cpe01g02383 Cpe-Chr1:19921644 Cpe13g00941 Cpe-Chr13:7932558 0 wgd
Cpe01g01454 Cpe-Chr1:8707125 Cpe13g00941 Cpe-Chr13:7932558 6.62E-79 wgd
Cpe13g00941 Cpe-Chr13:7932558 Cpe20g00203 Cpe-Chr20:1171178 6.73E-39 wgd
Cpe13g00941 Cpe-Chr13:7932558 Cpe09g01065 Cpe-Chr9:9274308 7.47E-34 wgd
Cpe13g00941 Cpe-Chr13:7932558 Cpe09g00164 Cpe-Chr9:956347 8.92E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50452 PF00046 Homeodomain 1.30E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00941 K09338 - csv:101212093 521.546