Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00943 ATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTTCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACCATAGATTCCGATAGCGCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAG 276 48.91 MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7944500 7944995 - Cp4.1LG13g08560.1 Cpe13g00943 480141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00943 91 Pfam Helix-loop-helix DNA-binding domain 13 57 IPR011598 GO:0046983
Cpe13g00943 91 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Cpe13g00943 91 Gene3D - 1 86 IPR036638 GO:0046983
Cpe13g00943 91 Coils Coil 54 74 - -
Cpe13g00943 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 75 IPR036638 GO:0046983
Cpe13g00943 91 CDD bHLH_AtPRE_like 9 74 - -
Cpe13g00943 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Cpe13g00943 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 57 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00943 - - - csv:101221024 163.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01455 Cpe13g00943 CCT
Cpe01g02386 Cpe13g00943 CCT
Cpe09g00166 Cpe13g00943 CCT
Cpe09g00166 Cpe13g00943 ECH
Cpe01g01455 Cpe13g00943 ECH
Cpe01g02386 Cpe13g00943 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00755 Cpe-Chr11:6037674 Cpe13g00943 Cpe-Chr13:7944500 6.21E-41 dispersed
Cpe13g00943 Cpe-Chr13:7944500 Cpe20g00032 Cpe-Chr20:153929 1.06E-07 dispersed
Cpe01g02386 Cpe-Chr1:19939859 Cpe13g00943 Cpe-Chr13:7944500 9.35E-54 wgd
Cpe01g01455 Cpe-Chr1:8719977 Cpe13g00943 Cpe-Chr13:7944500 9.84E-31 wgd
Cpe13g00943 Cpe-Chr13:7944500 Cpe18g00801 Cpe-Chr18:7497930 9.40E-35 wgd
Cpe13g00943 Cpe-Chr13:7944500 Cpe02g01072 Cpe-Chr2:9793157 3.88E-14 wgd
Cpe13g00943 Cpe-Chr13:7944500 Cpe04g01507 Cpe-Chr4:11898257 3.07E-35 wgd
Cpe13g00943 Cpe-Chr13:7944500 Cpe09g01071 Cpe-Chr9:9312154 1.67E-35 wgd
Cpe13g00943 Cpe-Chr13:7944500 Cpe09g00166 Cpe-Chr9:967519 1.52E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g883 Blo01g00423 Blo16g01124 Bda01g02165 Bda11g01226 Bpe13g01421 . . . Cmo04g01724 . . . . . Sed06g1543 Cpe09g00166 Cpe01g01455 Bhi07g01587 Tan04g1097 Cmetu10g1757 Lac13g0303 Hepe10g1727 . . Cla05g02457 Cam05g2643 Cec05g2676 Cco05g2713 Clacu05g2647 Cmu05g2501 Cre05g2614 Cone13ag0965 Cone19ag0957 Cone6ag0602 Cone9ag0607 . Csa05g02434 Chy10g00987 Cme10g00431 Blo06g00900 Blo11g00764 Bda07g01462 Bda11g01226 Bpe11g01635 Bpe02g02351 Bma01g00090 Bma06g00676 . Cmo04g02887 . Cma04g01645 . Car04g01686 Car15g00275 Cpe13g00943 . . . . . . . . . . . . . . . . . . .
Vvi14g1514 . . . Bda13g01683 Bpe02g01460 Bpe14g00186 . . . . . . . . Sed08g1720 . Cpe13g00943 Bhi06g00410 Tan11g0524 Cmetu09g0181 . Hepe02g3160 . Lcy10g1999 . . . . . . . . . . . Lsi02g01492 Csa05g02434 . . . . . . . . Bma01g01030 Bma02g00413 . Cmo04g02887 Cmo15g00294 . Cma15g00279 Car04g02655 Car15g00275 . Cpe01g02386 . . . . . . . Cla09g01790 Cam09g1880 Cec09g1943 Cco09g2036 . . Cre01g0627 . . Chy09g00262 Cme09g00285
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000232 9 5 5 6 7 5 7 5 5 5 5 5 7 5 5 4 5 6 8 5 4 4 5 2 4 5 5 8 5 3 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50453 PF00010 HLH 1.60E-05 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00943 Cpe_Chr13 FPKM 0.0 0.0 14.312463 14.387722 51.211071 51.792873 53.86792 1.255264 1.046648 0.804294