Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00944 ATGGCGGAACCAGTTGCAGAGCCCAAGGCATTACCCGAACCTGAAAAGAAAAAGGAACACACCCTTCCTTTCTTCCAGCTCTTCTCTTTCGCAGACAAATACGACTGCTTTCTTATGATCCTCGGCACTTTCGGCGCCATTGTCCATGGCTCTTCCATGCCCGTTTTCTTCCTCCTCTTCGGCCAAATGGTTAATGGCTTCGGCAAAAACCAATCCGATTTTCACAAGATGACAGCCGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTGTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGCACGTTGAGAAAGAAGTATTTAGAGGCTGTTTTGAAACAAGACGTTGGATTCTTTGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGCGTCTCAACAGACACTCTTCTTGTTCAAGATGCTATCAGTGAGAAGGTGGGGAACTTCATTCACTATCTCTCGACGTTCTTGGCTGGTTTGGTGGTGGGTTTTGTGTCAGCATGGCGACTAGCACTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTTACTGGACTCACTTCCAAGAGTCGGGAATCCTATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCCCTGAATTCCTATTCAGATGCGATTCATAACACGTTGAAAATTGGATATAAAGCTGGAATGGCCAAGGGGTTGGGCTTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGAAACGGCCAGAGCGACGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGTTTGGGGCAGTCATTTTCCAATTTGGGCGCATTCAGTAAAGGAAAAGCAGCAGGGTATAAATTGATGGAGATTATCAAACAGAGGCCTTCGATCATTCAAGACCCATTTGATGGGAAGTGTTTGGATGAAGTTAAAGGCAATATTGAGTTCAAAGATGTCACCTTTAGCTACCCATCCAGACCGGACGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCTGCCGGGAAGACTGTCGCCGTCGTGGGCGGCAGCGGTTCTGGGAAAAGCACCGTCGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCATGTTCTGCTGGACAATGTGGACATTAAGACGCTGCAATTGAAATGGCTACGTGATCAAATCGGTTTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTATGGCAAGCCCGATGCCACGACGGCGGAGGTGGAAGCCGCCGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTCCCCAATGGCTACGACACCCAAGTCGGCGAAAGAGGATTACAACTCTCCGGCGGCCAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCCCTCGATGCAGGTTCTGAAAGCATTGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACGGTTGTAGTCGCACATCGATTATCAACCATAAGAAACGTCGATTCAATTGCAGTAATACAACAGGGGCAGGTCGTCGAAACAGGAACCCACGAAGAACTAATCGCCAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCATCACGGCTGAGCCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGCTATTCGTATAGCACCGGCGCCGACGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACAGGAAAAATCCAGCCCCAGATGGCTATTTCATTCGTCTTCTTAAACTCAACGGCCCCGAATGGCCGTATTTGATAATGGGCGCTGTTGGGTCTATTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTGATGAGTAACATGATCGAGGTCTTCTATTACAAAAACTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTGGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTCACTACCAGAGTCAGAAGAATGATGCTCGCAGCGATATTGAGGGAAGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAGACTGGCCACTGATGCAGCCGATGTTAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTGCAAAACATGACTTCACTCTTCACTTCGTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTGCTCATCCTTGCAGCCTTCCCTCTGCTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCAAAGGCTCATGCGAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGCAATGAGCTTCGTGTCCCACAGAAACAGAGCCTCCGCCGGAGCCAAACGGCGGGTGTTCTTTTTGGAATCTCGCAGCTCGCTCTGTATGCGTCTGAAGCTCTGGTTTTATGGTATGGTGTTCATTTGGTCAGCAATGGCGGATCGACATTCTCCAAAGTGATTAAAGTCTTTGTTGTGTTGGTTGTTACTGCAAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGGGGTGGTGAATCAATTGGTTCTGTTTTCTCGATTCTCGGTCGCCCGACAATGATCGACCCCGATGATCCTGAGGCGGAGGTTGTTGAGACGCTTCGTGGGGAAATTGAGCTTCGACATGTCGATTTCGCAGTCGTATTGGAAGCCCACCTAAAATCCATAATAAACGAAAAGAAATGCCCCTTCCACAATGGCTACAATCAATTACCTGAGGGAGGAACACCACGAAGCGCCATGGCACGGTACAAACCTAAGACAGATGCTAAAGAGGAGCGCCATGGCACTGCCCCTCTTTGA 3213 47.28 MAEPVAEPKALPEPEKKKEHTLPFFQLFSFADKYDCFLMILGTFGAIVHGSSMPVFFLLFGQMVNGFGKNQSDFHKMTAEVSKYALYFVYLGLIVCVSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIHNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPSIIQDPFDGKCLDEVKGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGHVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYLIMGAVGSILSGFISPTFAIVMSNMIEVFYYKNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILREEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRNELRVPQKQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILGRPTMIDPDDPEAEVVETLRGEIELRHVDFAVVLEAHLKSIINEKKCPFHNGYNQLPEGGTPRSAMARYKPKTDAKEERHGTAPL 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7948987 7956776 - Cp4.1LG13g08370.1 Cpe13g00944 480142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00944 1070 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cpe13g00944 1070 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1016 IPR039421 -
Cpe13g00944 1070 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe13g00944 1070 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Cpe13g00944 1070 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cpe13g00944 1070 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524|GO:0016021
Cpe13g00944 1070 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cpe13g00944 1070 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524|GO:0016021
Cpe13g00944 1070 SMART AAA_5 390 582 IPR003593 -
Cpe13g00944 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cpe13g00944 1070 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1016 - -
Cpe13g00944 1070 MobiDBLite consensus disorder prediction 1054 1070 - -
Cpe13g00944 1070 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Cpe13g00944 1070 Pfam ABC transporter transmembrane region 685 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe13g00944 1070 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe13g00944 1070 Gene3D - 361 624 IPR027417 -
Cpe13g00944 1070 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Cpe13g00944 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Cpe13g00944 1070 MobiDBLite consensus disorder prediction 1038 1070 - -
Cpe13g00944 1070 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02278 Cpe-Chr1:19278151 Cpe13g00944 Cpe-Chr13:7948987 5.10E-17 dispersed
Cpe03g00195 Cpe-Chr3:970459 Cpe13g00944 Cpe-Chr13:7948987 7.08E-26 dispersed
Cpe08g01084 Cpe-Chr8:8234339 Cpe13g00944 Cpe-Chr13:7948987 1.54E-17 dispersed
Cpe09g01165 Cpe-Chr9:9879263 Cpe13g00944 Cpe-Chr13:7948987 1.91E-14 dispersed
Cpe13g00838 Cpe-Chr13:7397808 Cpe13g00944 Cpe-Chr13:7948987 1.16E-17 dispersed
Cpe13g00944 Cpe-Chr13:7948987 Cpe15g00199 Cpe-Chr15:1651350 3.06E-10 dispersed
Cpe16g00156 Cpe-Chr16:3599208 Cpe13g00944 Cpe-Chr13:7948987 1.65E-06 dispersed
Cpe19g01104 Cpe-Chr19:7459014 Cpe13g00944 Cpe-Chr13:7948987 2.89E-15 dispersed
Cpe19g01105 Cpe-Chr19:7461170 Cpe13g00944 Cpe-Chr13:7948987 2.89E-15 dispersed
Cpe20g00083 Cpe-Chr20:433845 Cpe13g00944 Cpe-Chr13:7948987 1.82E-91 dispersed
Cpe03g00276 Cpe-Chr3:1408706 Cpe13g00944 Cpe-Chr13:7948987 2.17E-43 transposed
Cpe04g01346 Cpe-Chr4:10987256 Cpe13g00944 Cpe-Chr13:7948987 7.89E-24 transposed
Cpe01g02388 Cpe-Chr1:19956958 Cpe13g00944 Cpe-Chr13:7948987 3.27E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00944 K05658 - csv:101212585 1799.64