Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00949 ATGGATTTAGCCCTACCTCCCATCACTACTACAACCACGGCTAATACCACCAAATCTCCCGACCCAGACTCCGACACTCCGACACGCTTCCCGCCGTCCTCTTCAGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCTCATCAACCCACCCTCGTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCCGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGACCCAGAGGATCCGATCTCTACTTTACCAATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGATGCGGAGTCCGAATTCGGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCGCCGCATATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCGTCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAATTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAACAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCCACACCCACCACAACCACCACCACCGCCGTCGTCAATATCAACAACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGGTCATCTTCTTCTTCTTGA 903 51.72 MDLALPPITTTTTANTTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAHQPTLVVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGMRSPNSASPPPISSSYYPSAPHMLLALSAGLSARPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQIGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPTTTTTTAVVNINNNDDEDEPDGGFHMHIGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7977814 7978716 - Cp4.1LG13g08360.1 Cpe13g00949 480147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00949 300 SUPERFAMILY Homeodomain-like 185 252 IPR009057 -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 1 41 - -
Cpe13g00949 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Cpe13g00949 300 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 269 - -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 249 276 - -
Cpe13g00949 300 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cpe13g00949 300 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 133 159 - -
Cpe13g00949 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 269 - -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 249 300 - -
Cpe13g00949 300 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
Cpe13g00949 300 Gene3D - 181 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00949 - - - csv:101213548 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00949 Cpe-Chr13:7977814 Cpe01g01712 Cpe-Chr1:11426926 1.30E-54 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe13g00949 Cpe-Chr13:7977814 5.27E-121 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe03g00513 Cpe-Chr3:3026427 2.28E-92 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe04g00062 Cpe-Chr4:611328 3.63E-89 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe09g00178 Cpe-Chr9:1036932 4.83E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50455 PF04770 ZF-HD_dimer 6.50E-28 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00949 Cpe_Chr13 FPKM 0.0 0.0 0.009835 0.005388 0.002938 0.0 0.00117 0.0 0.006496 0.001753