Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00949 ATGGATTTAGCCCTACCTCCCATCACTACTACAACCACGGCTAATACCACCAAATCTCCCGACCCAGACTCCGACACTCCGACACGCTTCCCGCCGTCCTCTTCAGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCTCATCAACCCACCCTCGTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCCGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGACCCAGAGGATCCGATCTCTACTTTACCAATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGATGCGGAGTCCGAATTCGGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCGCCGCATATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCGTCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAATTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAACAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCCACACCCACCACAACCACCACCACCGCCGTCGTCAATATCAACAACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGGTCATCTTCTTCTTCTTGA 903 51.72 MDLALPPITTTTTANTTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAHQPTLVVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGMRSPNSASPPPISSSYYPSAPHMLLALSAGLSARPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQIGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPTTTTTTAVVNINNNDDEDEPDGGFHMHIGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7977814 7978716 - Cp4.1LG13g08360.1 Cpe13g00949 480147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00949 300 SUPERFAMILY Homeodomain-like 185 252 IPR009057 -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 1 41 - -
Cpe13g00949 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Cpe13g00949 300 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 269 - -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 249 276 - -
Cpe13g00949 300 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cpe13g00949 300 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 133 159 - -
Cpe13g00949 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 269 - -
Cpe13g00949 300 MobiDBLite consensus disorder prediction 249 300 - -
Cpe13g00949 300 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
Cpe13g00949 300 Gene3D - 181 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00949 Cpe-Chr13:7977814 Cpe01g01712 Cpe-Chr1:11426926 1.30E-54 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe13g00949 Cpe-Chr13:7977814 5.27E-121 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe03g00513 Cpe-Chr3:3026427 2.28E-92 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe04g00062 Cpe-Chr4:611328 3.63E-89 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe09g00178 Cpe-Chr9:1036932 4.83E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50455 PF04770 ZF-HD_dimer 6.50E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00949 - - csv:101213548 400.208