Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00954 ATGTCCGATTCCGACTCTTCTTCCTCTCCTCCGCCGTCGCTGCCCCCGCCTCGCAGCCTCTCTATGCTTCTCCCCTTTCTGCTTGGCCTTGCCCGAACCACCCCTGGATCGCACCTCAACCAGATCGTCGTTCTCGATCATGCTGCCCGAACGGTCGTCGTTTTTGAAGGTCATGTTCTTGAGTCTTTTCTCCGCGACTTGTCGGAGAAATCCGGGCCGTTGCCTGCATCTAAGGCTTCGATCGATGCGATGCCGAGAGTCGGGATTACGGAATTGGGGATGGATTGTGCGATTTGCTTGGACGGATTTGAAGTTGGGGCGGAGGCGAGAGAGATGCCTTGCAAACATCTGTATCATTCGGATTGTATTGAGAAATGGTTGAGGGTTCGTGGAACGTGTCCGATTTGTCGGTTCACGATGCCGGTGGACGATCAGGAAGGGAAGAAGGACGATGATGAAGATATGGAAGGAGACGAAGGCCGAGTGGTTGTAGTGAATCTATGGGTTAACGACGGTGAACCAATGGATGTAGAATCGGTGGAATCGGGCTTGGGGCATGGATCGGGGGACTCCGATTCGGAATCTCACGATGAAATTACGGTCGAAGTTGACGCCTCATCAACGCAAGAACAAGATCCGAGTTCTGAAGATTCTTCGTCATTTTCATTTTCGTCCTTTTTCAACTAG 687 52.11 MSDSDSSSSPPPSLPPPRSLSMLLPFLLGLARTTPGSHLNQIVVLDHAARTVVVFEGHVLESFLRDLSEKSGPLPASKASIDAMPRVGITELGMDCAICLDGFEVGAEAREMPCKHLYHSDCIEKWLRVRGTCPICRFTMPVDDQEGKKDDDEDMEGDEGRVVVVNLWVNDGEPMDVESVESGLGHGSGDSDSESHDEITVEVDASSTQEQDPSSEDSSSFSFSSFFN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7992308 7992994 + Cp4.1LG13g08440.1 Cpe13g00954 480152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00954 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Cpe13g00954 228 MobiDBLite consensus disorder prediction 204 228 - -
Cpe13g00954 228 SUPERFAMILY RING/U-box 95 143 - -
Cpe13g00954 228 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Cpe13g00954 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MPSR1 42 152 - -
Cpe13g00954 228 MobiDBLite consensus disorder prediction 173 228 - -
Cpe13g00954 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 152 - -
Cpe13g00954 228 SMART ringv_2 95 137 IPR011016 GO:0008270
Cpe13g00954 228 CDD RING-H2_PA-TM-RING 95 137 - -
Cpe13g00954 228 SMART ring_2 96 136 IPR001841 -
Cpe13g00954 228 Pfam Ring finger domain 95 137 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00954 - - K11982 csv:101217305 281.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00183 Cpe13g00954 CCT
Cpe01g01470 Cpe13g00954 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01348 Cpe-Chr2:11923688 Cpe13g00954 Cpe-Chr13:7992308 1.22E-32 dispersed
Cpe13g00954 Cpe-Chr13:7992308 Cpe20g00175 Cpe-Chr20:1001030 1.01E-25 dispersed
Cpe01g01470 Cpe-Chr1:8790792 Cpe13g00954 Cpe-Chr13:7992308 5.12E-29 wgd
Cpe13g00954 Cpe-Chr13:7992308 Cpe20g00198 Cpe-Chr20:1133120 3.68E-18 wgd
Cpe13g00954 Cpe-Chr13:7992308 Cpe09g01094 Cpe-Chr9:9462056 2.68E-25 wgd
Cpe13g00954 Cpe-Chr13:7992308 Cpe09g00183 Cpe-Chr9:1058612 3.18E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g922 . . . . . Bpe10g00877 Bma14g01646 . Cmo04g01742 Cmo18g01167 . Cma18g01147 . Car18g01056 Sed08g1981 Cpe09g00183 Cpe01g01470 Bhi07g01557 Tan04g1072 Cmetu10g1747 Lac13g0324 Hepe10g1749 . . Cla05g02437 Cam05g2622 Cec05g2655 Cco05g2693 Clacu05g2624 Cmu05g2478 Cre05g2591 . . . . Lsi04g00415 Csa05g02459 Chy10g01009 Cme10g00409 . . . . . . . . . . . . . Car04g01702 Car15g00265 Cpe13g00954 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014254 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00954 Cpe_Chr13 FPKM 0.725712 0.470649 0.816315 0.867039 1.597917 0.925926 0.972702 1.435304 1.377882 1.636154