Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00956 ATGGCTTCATTGGGGATCATAATCCTCTTAGTGGGTGTTTCTTGGATGGTGTCGTGTGTTAATGGCGATTATGGGGGTTGGATCAACGCGCACGCCACTTTCTATGGTGGCAGTGATGCATCTGGGACAATGGGGGGGGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGAACCAACACTGCAGCGCTAAGCACGGCGCTATTTGACAATGGCCTTAGCTGTGGCGCTTGCTTTGAGCTGCGCTGTGTCAACGACCCACAGTGGTGTATTCCAGGCACTATTGTTGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCACCATTTCGATCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGTGCCGGAATTGTCCCCGTGGCTTACCGCAGCTGTTCAGTTGATGGGGTTGAAGGGTTTGTTTGTTTGGCTGCTGAATTA 471 52.02 MASLGIIILLVGVSWMVSCVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRSCSVDGVEGFVCLAAEL 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8016994 8018499 - Cp4.1LG13g08390.1 Cpe13g00956 480154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00956 157 SUPERFAMILY Barwin-like endoglucanases 26 145 IPR036908 -
Cpe13g00956 157 Pfam Lytic transglycolase 62 139 IPR009009 -
Cpe13g00956 157 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cpe13g00956 157 Gene3D - 13 143 IPR036908 -
Cpe13g00956 157 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Cpe13g00956 157 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cpe13g00956 157 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Cpe13g00956 157 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cpe13g00956 157 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cpe13g00956 157 PANTHER EXPANSIN-A5 10 144 - -
Cpe13g00956 157 PANTHER EXPANSIN-A15 10 144 IPR002963 GO:0009664
Cpe13g00956 157 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cpe13g00956 157 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cpe13g00956 157 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cpe13g00956 157 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cpe13g00956 157 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00956 Cpe-Chr13:8016994 Cpe01g00990 Cpe-Chr1:5865470 1.14E-66 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe13g00956 Cpe-Chr13:8016994 2.33E-72 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe18g00787 Cpe-Chr18:7441911 1.99E-68 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe04g01494 Cpe-Chr4:11841897 2.21E-72 wgd
Cpe13g00956 Cpe-Chr13:8016994 Cpe09g00189 Cpe-Chr9:1092462 5.63E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00956 K20628 - vvi:100244103 272.707