Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00957 ATGTATGGTAGATTAGCTAAAATTAGTTGCGAAAGAAAATCAATTCCAAATATTTTCGTGGCAAAGTGCAATTTAGCGAAATTCATGGCTGGTCAGAGGAATAGTTACGGAAAACGTAATCGTTCTCAGTCCGATTATTCTGAAAATGGAGGGAACAAAAGAAGAAGTCACGGTGAGGACCGGGACCAGTTTATCATAGATCCAGAAGATACTGTTTACCGGTATTTGTGCCCTGTTAAAAAGATTGGAAGTGTTATTGGAAGGGGAGGTGAGATAGTGAAGCAGTTAAGGATAGATACTAAATCAAAGATTAGAATTGGAGAAACAGTGCCTGGATCTGATGAGCGTGTCATAACAATCTACAGCGCAAGCAATGAGGCTAATGCTTTGGAAGAAAGTAGTGATTATAGTTCTCCAGCTCAGCAGGCTTTGTTCAAAGTCCACCATAGAGTTGTGGCCGATGACCTAATGGGCGAGGAATCTGAAGTAGGAAGTCACCAGGTTACAGCTAGACTTCTTGTACCCTCTGATCAAATTGGTTGTATTATTGGGAAAGGTGGGCAGATTGTCCAGAATATTCGCACTGAGACTGGGGCCCTGATTCGCATTCTTAAGGATGATCATTTACCCCGTTGTGCTCTGAGTTCTGATGAACTTGTGCAGATATCTGGTGAACCCCCGATTGTGGAGAAAGCCTTATACCAGATTGCATCTCGACTGCATGAAAATCCTTCACGATCTCAGCATCTACTTGCTTCTGCCATACCTGGTGTATATCCTTCTGGTGGTTCGCTTGTGGCTTCAACACATGGTGCTCCAATTATGGGTTTAGCTCCTTTGGTCAGTCCATATGGAGGTTATAAAGGGGACAGTGGTAATTGGTCCAGGTCTTTATATTCAGCTCCAAGGGAAGAATTATCTTCAAAAGAATTTTCTCTTCGATTGATATGTCCAACCGAAAACATTGGAGGTGTCATTGGCAAAGGTGGAGCTGTAATCAATCAGATTAGACAGGAGACTAAGGCTGCCATAAAAGTTGATAGTTCAGCTACTGAAGATGATTGTTTGATAAATATATCATCAAAGGAGTTCTTTGAAGATTCATATTCTCCCACGCTGGAAGCTGCATTGCGCTTGCAACCAAGGTGCAGTGAGAAAGTAGAAAGAGATTCTGGAATTATTTCATTCACAACCCGTCTGCTTGTGCCTACCTCACGAATTGGTTGCCTAATTGGTAAAGGTGGAGCTATCATTACCGAGTTGAGAAGGCTCACCAAAGCTAATATTCGAATACTGTCAAAGGAAAACCTCCCCAAGGTTGCCTTGGAAGATGATGAAATGGTGCAGATATCCGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTTCATATAGTGACCAGGTTGAGAGCCAACCTTTTTGATAGAGAGGGTGCTCTCTCAGCTGTTCTGCCTGTTCTGCCGTATCTTCCTCTATCAGCTGATGGTTCAGAAAGTCTATATGATGGTAGAGAAGGCAAAAGACATGGGCGTGGGCATTCTTATTCTAGTAGTTATGGGGGTTTCACGGATTTGGCTGCTGGTGATGGTTATGGAAGTTACAGTGGCTCACAGATTGGTGGTGGTGGTAGTGCTTATGGGGCCTATGGAAGCTTTTCCATGGGACGAAGTGGGTTTCTGGACATGGCAATGTTTCTCGGAGGAGAAACTATTCCTAGATTTTGGTGGTCATTATTTACAGTATTTTATCTTCAAAAGGATTTTTTCTGTGAACATAGCTATGAGGTCAAGCCTAAACATCTGTGCCAG 1806 43.02 MYGRLAKISCERKSIPNIFVAKCNLAKFMAGQRNSYGKRNRSQSDYSENGGNKRRSHGEDRDQFIIDPEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSASNEANALEESSDYSSPAQQALFKVHHRVVADDLMGEESEVGSHQVTARLLVPSDQIGCIIGKGGQIVQNIRTETGALIRILKDDHLPRCALSSDELVQISGEPPIVEKALYQIASRLHENPSRSQHLLASAIPGVYPSGGSLVASTHGAPIMGLAPLVSPYGGYKGDSGNWSRSLYSAPREELSSKEFSLRLICPTENIGGVIGKGGAVINQIRQETKAAIKVDSSATEDDCLINISSKEFFEDSYSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSESLYDGREGKRHGRGHSYSSSYGGFTDLAAGDGYGSYSGSQIGGGGSAYGAYGSFSMGRSGFLDMAMFLGGETIPRFWWSLFTVFYLQKDFFCEHSYEVKPKHLCQ 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8021297 8026212 + Cp4.1LG13g08490.1 Cpe13g00957 480155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00957 602 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 37 509 - -
Cpe13g00957 602 SMART kh_6 394 469 IPR004087 GO:0003676
Cpe13g00957 602 SMART kh_6 309 381 IPR004087 GO:0003676
Cpe13g00957 602 SMART kh_6 166 241 IPR004087 GO:0003676
Cpe13g00957 602 SMART kh_6 69 141 IPR004087 GO:0003676
Cpe13g00957 602 CDD PCBP_like_KH 72 132 - -
Cpe13g00957 602 ProSiteProfiles Type-1 KH domain profile. 395 464 - -
Cpe13g00957 602 CDD PCBP_like_KH 169 237 - -
Cpe13g00957 602 Pfam KH domain 169 237 IPR004088 GO:0003723
Cpe13g00957 602 Pfam KH domain 73 126 IPR004088 GO:0003723
Cpe13g00957 602 Pfam KH domain 397 464 IPR004088 GO:0003723
Cpe13g00957 602 Pfam KH domain 313 361 IPR004088 GO:0003723
Cpe13g00957 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 360 IPR036612 GO:0003723
Cpe13g00957 602 PANTHER PROTEIN BTR1-LIKE 37 509 - -
Cpe13g00957 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 244 IPR036612 GO:0003723
Cpe13g00957 602 Gene3D - 310 471 - -
Cpe13g00957 602 Gene3D - 69 248 - -
Cpe13g00957 602 CDD PCBP_like_KH 312 362 - -
Cpe13g00957 602 CDD PCBP_like_KH 397 465 - -
Cpe13g00957 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 66 125 IPR036612 GO:0003723
Cpe13g00957 602 MobiDBLite consensus disorder prediction 48 63 - -
Cpe13g00957 602 ProSiteProfiles Type-1 KH domain profile. 167 236 - -
Cpe13g00957 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 395 469 IPR036612 GO:0003723
Cpe13g00957 602 ProSiteProfiles Type-1 KH domain profile. 70 137 - -
Cpe13g00957 602 MobiDBLite consensus disorder prediction 34 63 - -
Cpe13g00957 602 ProSiteProfiles Type-1 KH domain profile. 310 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00957 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101220588 893.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02399 Cpe13g00957 CCT
Cpe01g02399 Cpe13g00957 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00443 Cpe-Chr12:3720550 Cpe13g00957 Cpe-Chr13:8021297 5.51E-19 dispersed
Cpe12g00536 Cpe-Chr12:5504506 Cpe13g00957 Cpe-Chr13:8021297 5.10E-55 dispersed
Cpe13g00957 Cpe-Chr13:8021297 Cpe19g01144 Cpe-Chr19:7677239 5.21E-26 dispersed
Cpe17g01040 Cpe-Chr17:7868679 Cpe13g00957 Cpe-Chr13:8021297 4.68E-18 dispersed
Cpe01g02399 Cpe-Chr1:20014574 Cpe13g00957 Cpe-Chr13:8021297 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
Vvi14g1566 . Blo11g00579 Bda01g01230 Bda13g01696 Bpe02g01449 Bpe14g00170 Bma14g01457 . . . . . . . Sed11g2011 . Cpe13g00957 Bhi06g00384 Tan11g0501 Cmetu09g1584 . . . Lcy10g2015 . . . . . . . . . Cone2ag0199 Cone16ag0842 Lsi02g01474 Csa05g02996 . . . Blo18g00394 Bda07g01349 . . Bpe11g01454 Bma01g01048 Bma02g00389 . Cmo04g02901 Cmo15g00272 Cma04g02771 Cma15g00263 Car04g02668 Car15g00261 . Cpe01g02399 . . . . . . . Cla09g01771 Cam09g1861 Cec09g1923 Cco09g2017 . . Cre01g0647 . . Chy09g00237 Cme09g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003362 3 1 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00957 Cpe_Chr13 FPKM 426.495087 461.326324 3.857317 4.642801 2.513638 4.14618 2.271302 13.921564 14.11614 13.893666