Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00962 ATGTATATGAAGTTCGGGAAGGAGTTTTTGTCCCAAATGGTGCCGGAATGGCAAGAAGCGTACTTGGATTACAATAATCTGAAAGCAATTTTGAAAGAAGTAAGCATATCTAGGCAGCCAAAAGCTCCGGATGCCTCAGGAAAGCTAAAGAGAAAGATGTCATTGTATAGAGCTTTCAGTGGGCTTACAACGCAGAGGAATTCTCCAAGGAAGCAGGATGATGCAATCATCACAAACATCGTTCATAATGGTTCTGAAGAGAGCTATCAGAGCATGTTCTTTATGTCATCTGACCAAGGAGGTGGAAATGAGGTGCTATTCTTTAGGGAACTTGATGCTGAGTTCAATAAAGTGGTGAGGTTTTACAAGAAGAAAGTGGGGGAGCTGACGGTGGAGGCTGAGGAATTGAGCAAACAGATGGATATTTTGGTTGCTCTAAGGATTAAGGTGGAGAAACCAGATGTTGCTTCCAACGATGTCGATGAACCTGTGGATCTAGCAGGAACTGCAGCCTCCTCAACTGTTAATTCCATCAATGGAAGAAGTACAGATTGTGTTTTAGAAGGACGGTCGCGCTTCGAAATAACTCAGGAAGTTGAGACGGTAGAGGAGGAGATGGAAGCAAAAGAGGGCAACAGTTACAGCAGGAAGAGGAGTAGGGGAACAACTCAAACCATTCAAGAACACAGGCCAGCCTCATTAGACTTGTTACCCCATGTAAGGATTAATATCGCTCCTGAAACACCA 747 43.91 MYMKFGKEFLSQMVPEWQEAYLDYNNLKAILKEVSISRQPKAPDASGKLKRKMSLYRAFSGLTTQRNSPRKQDDAIITNIVHNGSEESYQSMFFMSSDQGGGNEVLFFRELDAEFNKVVRFYKKKVGELTVEAEELSKQMDILVALRIKVEKPDVASNDVDEPVDLAGTAASSTVNSINGRSTDCVLEGRSRFEITQEVETVEEEMEAKEGNSYSRKRSRGTTQTIQEHRPASLDLLPHVRINIAPETP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8047720 8048600 - Cp4.1LG13g08410.1 Cpe13g00962 480160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00962 249 Coils Coil 192 212 - -
Cpe13g00962 249 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 3 70 - -
Cpe13g00962 249 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 81 249 - -
Cpe13g00962 249 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 3 70 - -
Cpe13g00962 249 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 81 249 - -
Cpe13g00962 249 Pfam SPX domain 3 213 IPR004331 -
Cpe13g00962 249 Coils Coil 119 139 - -
Cpe13g00962 249 MobiDBLite consensus disorder prediction 202 235 - -
Cpe13g00962 249 ProSiteProfiles SPX domain profile. 3 249 IPR004331 -
Cpe13g00962 249 CDD SPX_PHO1_like 4 154 IPR034092 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00962 - - - csv:101212473 358.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00196 Cpe13g00962 CCT
Cpe01g02407 Cpe13g00962 CCT
Cpe01g02407 Cpe13g00962 ECH
Cpe09g00196 Cpe13g00962 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00196 Cpe-Chr9:1127142 Cpe13g00962 Cpe-Chr13:8047720 1.49E-47 dispersed
Cpe13g00962 Cpe-Chr13:8047720 Cpe13g00964 Cpe-Chr13:8050573 4.49E-74 proximal
Cpe01g02407 Cpe-Chr1:20046083 Cpe13g00962 Cpe-Chr13:8047720 3.34E-125 wgd
Cpe01g01483 Cpe-Chr1:8847065 Cpe13g00962 Cpe-Chr13:8047720 6.75E-45 wgd
Cpe13g00962 Cpe-Chr13:8047720 Cpe09g00194 Cpe-Chr9:1115896 1.17E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
Vvi14g1575 Blo10g00142 Blo11g00573 . . . . . . . . . . . . . . Cpe13g00962 Bhi06g00375 Tan11g0488 . . . . . . . . . . . . . . . . Lsi02g01467 Csa05g02482 . . . . . Bda12g00171 . . . . . Cmo04g02908 Cmo15g00265 Cma04g02778 Cma15g00253 Car04g02676 Car15g00256 . Cpe01g02407 . . . . . . . Cla09g01763 Cam09g1854 . Cco09g2009 . . Cre01g0655 . . Chy09g00228 Cme09g00246
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00962 Cpe_Chr13 FPKM 23.49334 25.680988 24.322147 22.946394 16.842098 17.37612 18.56156 27.734303 25.748171 28.394983