Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00964 ATGAAGTTTAGGAAGGAATTTATGTCTCAAATGGTGCCAGAATGGCAAGAGGCATACCTGGATTACAGCCATCTGAAAACAGTGTTGAAAGAAGTCAGCCGGGCGAGACAGCCAGAGGCATCCGATGGGACAACGCGCAACTTGAAGAGAAGGGTCTCTCTGTACAGAGCTTTCAGCGGGCTAGCAGGACCGAGACGCTCTCAACAGATGCAGGAGGATGCTATACATACAAACATAATTCATACAGGGTCTGAAGAGTGTTACCAGAGCATGCTGTTCGCTTCATCGTCGGAGCAAAGCGATGAACATCAGGTGGAGTTCTTCAGGAGACTTGATGATGAGTTTAATAAAGTGGTGGGGTTTTACAAGAAGGAAGTGGCGGAGCTGATGGGGGAGGCTGAGGAGTTGAGCAAGCAGATAGATATCTTGATTGCGCTGCGGATTAAGGTAGAGAAGCCAGATATTGCTCTTGAAGATTTTAATGAGAGTGTCAGTCTTACAGGTAGTAGTACATCCTCAGCTTCTACTTCTACTGCTAAGTCCACTTTTCCCAGAACTGCAAAACGGTCAAGCTTGGAGGTAACCCAAGAAGTTGAGATGGAAACTAGAGAAGCAAAAAGTAACAGCAGGAAGGCCAGTGGAGGAATAGCTCATCCTACCATTCAAAAACTCAAGATGGAGAATGAACACCTGAACAATGTGGGGAAGTTCAGAGCATTCAACTCTGTGCCATTACCTTTCGAATTCGACGACAACAACAACAAAATGAGAACTCGGCTATGA 783 45.85 MKFRKEFMSQMVPEWQEAYLDYSHLKTVLKEVSRARQPEASDGTTRNLKRRVSLYRAFSGLAGPRRSQQMQEDAIHTNIIHTGSEECYQSMLFASSSEQSDEHQVEFFRRLDDEFNKVVGFYKKEVAELMGEAEELSKQIDILIALRIKVEKPDIALEDFNESVSLTGSSTSSASTSTAKSTFPRTAKRSSLEVTQEVEMETREAKSNSRKASGGIAHPTIQKLKMENEHLNNVGKFRAFNSVPLPFEFDDNNNKMRTRL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8050573 8054274 - Cp4.1LG13g08400.1 Cpe13g00964 480162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00964 260 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 1 62 - -
Cpe13g00964 260 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 62 - -
Cpe13g00964 260 Coils Coil 119 146 - -
Cpe13g00964 260 CDD SPX_PHO1_like 2 154 IPR034092 -
Cpe13g00964 260 Pfam SPX domain 1 226 IPR004331 -
Cpe13g00964 260 ProSiteProfiles SPX domain profile. 1 260 IPR004331 -
Cpe13g00964 260 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 225 257 - -
Cpe13g00964 260 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 83 201 - -
Cpe13g00964 260 MobiDBLite consensus disorder prediction 165 214 - -
Cpe13g00964 260 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 225 257 - -
Cpe13g00964 260 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 9 83 201 - -
Cpe13g00964 260 MobiDBLite consensus disorder prediction 192 208 - -
Cpe13g00964 260 MobiDBLite consensus disorder prediction 165 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00964 - - - cmo:103498504 234.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02407 Cpe-Chr1:20046083 Cpe13g00964 Cpe-Chr13:8050573 5.10E-80 dispersed
Cpe09g00194 Cpe-Chr9:1115896 Cpe13g00964 Cpe-Chr13:8050573 2.05E-22 dispersed
Cpe13g00964 Cpe-Chr13:8050573 Cpe01g01377 Cpe-Chr1:8279352 4.96E-06 dispersed
Cpe13g00962 Cpe-Chr13:8047720 Cpe13g00964 Cpe-Chr13:8050573 4.49E-74 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00964 Cpe_Chr13 FPKM 22.842546 23.58989 24.90661 24.993917 21.950863 20.626842 21.018772 24.083885 23.036259 20.049213