Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00970 ATGGAGGCCAAGCTGCTTTTTACTTCCTTCCCTGCAACCTCTGCGGCTCGTCTCTCCAAGCTCTCCACACCCACCTGCGTTTTTGCCTCCTATGGTGGGAAGAATCGTGGGGTTTTGCCTCTCCATTTGAGTTTGCCTCATGGAGCTGCCCTTCATTCTGTTCAAGCCTCTGTGGCGTCTGTTGGACCATCACCAAAATCAAGGGTGGACATCAGTGAGAACTTGACCCTAGAGGCAATAAGACACTCGTTAATCTCTCAGGAGGACAGCATTATCTTTAGTCTTTTAGGGAGAGCTCAGTACTGTTATAATGGAGATACCTATGACCCCAATGCTTTCTCCATGGATGGCTTCAGTGGCTCTTTAGTGGAGTTCTTGGTCATGGAAACTGAAAAGCTGCATGCCCAGGTGGGAAGATACAAGAGCCCTGATGAACATCCTTTCTTCCCCAACGACCTACCTGCTCCATTGTTGCCTCCGCTTCAGTATCCACAGGTACTACATCCTCCGGCGGATTCCATTAATATAAACAGCAAAGTATGGAGCATGTACTTCAGGGATCTGATACCAAGATTAGTCAAGGAAGGAGATGATAGCAATTATGGATCTACTGCTGTTTGTGACACCATTTGCTTGCAGGCTCTATCAAAGAGAATCCATTATGGAAAGTTCGTAGCAGAAGCAAAGTTTCGAGAATCGCCCGATGCGTACGAAGCTGCAATAAGGAAGCAAGACAAAGAGAAACTAATGGAGATGCTGACATTCCCGATCGTCGAGGAGGCGGTAAAAAGGAGAGTCGAAACGAAAGCGAAAACATTCGGGCAAGAGGTTCCTGTAAACATAGAGGAAACACATGCTGCTCCAGTTTACAAAATAGAACCCAGTTTGGTTGCTGAACTGTATGGAGAATGGATCATGCCATTAACAAAGGAAGTTCAAGTTCAATACTTGTTGAGAAGATTAGATTGA 969 45.92 MEAKLLFTSFPATSAARLSKLSTPTCVFASYGGKNRGVLPLHLSLPHGAALHSVQASVASVGPSPKSRVDISENLTLEAIRHSLISQEDSIIFSLLGRAQYCYNGDTYDPNAFSMDGFSGSLVEFLVMETEKLHAQVGRYKSPDEHPFFPNDLPAPLLPPLQYPQVLHPPADSININSKVWSMYFRDLIPRLVKEGDDSNYGSTAVCDTICLQALSKRIHYGKFVAEAKFRESPDAYEAAIRKQDKEKLMEMLTFPIVEEAVKRRVETKAKTFGQEVPVNIEETHAAPVYKIEPSLVAELYGEWIMPLTKEVQVQYLLRRLD 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8086024 8088493 - Cp4.1LG13g08150.1 Cpe13g00970 480168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00970 322 PANTHER CHORISMATE MUTASE 1 322 IPR008238 GO:0004106|GO:0009073
Cpe13g00970 322 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 68 322 IPR037039 GO:0004106|GO:0009073
Cpe13g00970 322 ProSiteProfiles Chorismate mutase domain profile. 68 322 IPR008238 GO:0004106|GO:0009073
Cpe13g00970 322 TIGRFAM CM_pl-yst: chorismate mutase 75 322 IPR008238 GO:0004106|GO:0009073
Cpe13g00970 322 PANTHER CHORISMATE MUTASE 1, CHLOROPLASTIC 1 322 - -
Cpe13g00970 322 SUPERFAMILY Chorismate mutase II 68 322 IPR036263 GO:0046417
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00970 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101203315 494.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02416 Cpe13g00970 CCT
Cpe04g00181 Cpe13g00970 CCT
Cpe04g00181 Cpe13g00970 ECH
Cpe01g02416 Cpe13g00970 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00324 Cpe-Chr2:1714641 Cpe13g00970 Cpe-Chr13:8086024 5.80E-90 dispersed
Cpe06g00295 Cpe-Chr6:1614531 Cpe13g00970 Cpe-Chr13:8086024 9.13E-69 dispersed
Cpe04g00181 Cpe-Chr4:1839667 Cpe13g00970 Cpe-Chr13:8086024 2.81E-115 transposed
Cpe01g02416 Cpe-Chr1:20096123 Cpe13g00970 Cpe-Chr13:8086024 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02921 . . . . Car15g00248 Cpe13g00970 . . . . . . . . . . . . . . . . . Chy09g00214 .
Vvi14g1594 Blo10g00146 . . . . . Bma14g01444 Bma13g00173 . Cmo11g01200 . . Car11g00975 . Sed11g2034 . Cpe13g00970 Bhi06g00362 Tan11g0456 Cmetu09g1862 . Hepe02g2106 . Lcy10g2042 . . . . . . . . . Cone2ag0534 Cone16ag0482 . Csa05g03018 . . . . Bda07g01334 Bda12g00176 Bpe11g00065 Bpe11g01440 . . . Cmo04g02921 Cmo15g00257 Cma04g02789 Cma15g00247 Car04g02687 Car15g00248 Cpe04g00181 Cpe01g02416 Bhi11g02936 . . . . . . . . . . . . . . Csa03g03794 Chy09g00214 Cme09g00233
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001686 1 4 1 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 4 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00970 Cpe_Chr13 FPKM 3.201961 4.112769 6.533266 6.790656 64.090538 62.578293 50.572124 0.838469 0.3546 0.245697