Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00977 ATGAACACTGACCACGACGGTGGCCTCGCTTGTGCCATTGTCGATATGTCAATGGGTTGGGTCCTCGAAATCGCTGCCAGTTTGGGCGTGAAAGGAGCCATTTTCACGCCTTTCACAGCCGCTCACTCTGTTTTGAATCTCAGCCATAACGAACTTATTGAAAGTGGCATCATAACCCCAGAAGGGATTCCGGTAGAAGAAAAGACAATCGAATTGGAATCACTGGGAACTCCCTCAATGATCCACACTAGTGACCTTCCTTGGCGGTGCGTTCCATTCAAGAACTCGCAAAAGATTTTGTTCGATCACTTAGTTAGAGTCCAGCGAGGGTGCCATTACGCGAAATGGTACATTTTAATAGTGCCTCACGTATTGGAGCCACAAGTGGTTTCACTCAACCCCAAGCTTCTAACGATTGGCCCACTCATTGCGACGGAGGCAGGGCAATTGTGGAAAGAAGACGAGTCCTGCATCCATTGGCTGGACCAGCAACCGGCAGGGTCGGTTGTGTACATGGCATTTGGGAGCAGCACCGACTTCAACCAGGAACAGTTTGAGGAGATCGCGATGGGGATGGAGCTTACGGAGCGACCGTTCATGTGGGTGGTGCGGCAGGGAACAGAGCACCAACTTCCAGCGGGTTTTAAGGGGGGAAAAGGGAAAATAGTGAGTTGGGTGTCGCAGCAAAAGGTGCTAAACCACCCTTCTGTAGGGATATTTATGAGCCACTGTGGGTGGGACTCTGTAATCGAAGGGGTGAGTAGTTCCTTTGTTGGCCGTACGTGGGAGACCATTTTCTGA 801 50.81 MNTDHDGGLACAIVDMSMGWVLEIAASLGVKGAIFTPFTAAHSVLNLSHNELIESGIITPEGIPVEEKTIELESLGTPSMIHTSDLPWRCVPFKNSQKILFDHLVRVQRGCHYAKWYILIVPHVLEPQVVSLNPKLLTIGPLIATEAGQLWKEDESCIHWLDQQPAGSVVYMAFGSSTDFNQEQFEEIAMGMELTERPFMWVVRQGTEHQLPAGFKGGKGKIVSWVSQQKVLNHPSVGIFMSHCGWDSVIEGVSSSFVGRTWETIF 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8104855 8105655 + Cp4.1LG13g08280.1 Cpe13g00977 480175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00977 266 Gene3D Glycogen Phosphorylase B; 152 255 - -
Cpe13g00977 266 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 154 255 IPR002213 GO:0008194
Cpe13g00977 266 PANTHER EG:EG0003.4 PROTEIN-RELATED 10 255 - -
Cpe13g00977 266 CDD GT1_Gtf-like 11 255 IPR002213 GO:0008194
Cpe13g00977 266 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 10 255 - -
Cpe13g00977 266 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 255 - -
Cpe13g00977 266 Gene3D Glycogen Phosphorylase B; 8 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00977 - - - cpep:111809327 551.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00977 Cpe-Chr13:8104855 Cpe06g00557 Cpe-Chr6:3350292 2.77E-28 dispersed
Cpe13g00977 Cpe-Chr13:8104855 Cpe04g00305 Cpe-Chr4:3830763 1.83E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car15g00242 Cpe13g00977 . . . . . . . . . . . . . . . . . Chy09g00204 .
Vvi14g1042 . . . . . . . . . . . . . . . . Cpe13g00977 . . . . . . . Cla11g00443 . . . . . . . . Cone2ag0514 . . . . . . . . . . . . . . . . . Cma15g00240 . Car15g00242 . . . . . . . . . . . . . . . . Lsi03g00165 . Chy09g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013317 0 1 0 0 0 1 2 1 1 1 1 0 2 0 1 1 1 0 2 1 0 2 0 2 2 1 1 2 0 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00977 Cpe_Chr13 FPKM 21.897648 24.741789 35.663685 34.513004 11.845752 12.248187 11.982133 26.535822 24.999884 24.836338