Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00990 | AAGGGAGTGAAGATATGGAGCTTGTTATCCAGCTACCAGCAAAGGGGCACCGGCAGTGAGCGAGGGAGAAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCCCCCCACTTTACTCATCTCTCAAGCTAAATTGGTTTATCTGTCGACTTGGGAATCTGCCGGTTGGAAGATTGGTAGGAGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCGAATAGTTCACTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACAGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAACCTTTAAGAGGTGATGTGGATACAGATTCAGATTCGTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTCGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACGACTTGA | 900 | 45.0 | KGVKIWSLLSSYQQRGTGSERGRRFLCPPPTTEDRILFRSSLLPPLYSSLKLNWFICRLGNLPVGRLVGVGTMGAVCCCLSVEDFEDYVNPNSSLYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGATPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8173990 | 8178019 | - | Cp4.1LG13g08020.1 | Cpe13g00990 | 480188 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00990 | 299 | MobiDBLite | consensus disorder prediction | 175 | 195 | - | - | |
| Cpe13g00990 | 299 | SMART | ring_2 | 249 | 289 | IPR001841 | - | |
| Cpe13g00990 | 299 | MobiDBLite | consensus disorder prediction | 175 | 205 | - | - | |
| Cpe13g00990 | 299 | ProSiteProfiles | Zinc finger RING-type profile. | 249 | 289 | IPR001841 | - | |
| Cpe13g00990 | 299 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 73 | 298 | - | - | |
| Cpe13g00990 | 299 | SUPERFAMILY | RING/U-box | 243 | 295 | - | - | |
| Cpe13g00990 | 299 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 296 | IPR013083 | - | |
| Cpe13g00990 | 299 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 73 | 298 | - | - | |
| Cpe13g00990 | 299 | Pfam | RING-H2 zinc finger domain | 246 | 289 | IPR024766 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g02439 | Cpe13g00990 | CCT | |
| Cpe01g02439 | Cpe13g00990 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00349 | Cpe-Chr5:1953671 | Cpe13g00990 | Cpe-Chr13:8173990 | 7.36E-28 | dispersed | |
| Cpe13g00990 | Cpe-Chr13:8173990 | Cpe18g00841 | Cpe-Chr18:7755223 | 1.78E-06 | dispersed | |
| Cpe01g02439 | Cpe-Chr1:20233827 | Cpe13g00990 | Cpe-Chr13:8173990 | 9.93E-150 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00990 | - | - | csv:101207736 | 448.358 |