Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00994 ATGGGGGCGGTGACATCGTCCATGGCGGCGAAGTTCGCGTTCTTTCCGCCGAATCCGCCATCGTATAAAGTGGAAGAGGTGGAGGACGGCACCGGGAAGCTGGTGATGACGGAGGTAGCGGCAAGGGGAAACTTCGACGTTTTGAAGCTCAGTACCAAGAGAGGGAACCAGGTTGTGGCCCTGTATGTAAAGAATGTATCAGCTACTTTAACGTTGCTTTATTCCCATGGAAACGCTGCGGATTTGGGGCAGATGTACGACTTGTTTGTGGAGCTTAGTTCTCATCTTCGAGTCAACTTGATAGGGTACGACTATTCGGGATATGGCCAATCTACTGGAAAGGTAAGAAATCTTATTTTTCTATTGCCAGATCCTCCAAGTGAGCAGAATACTTATGCAGACATTGAAGCTGTGTATAGATGCCTAGTGGAGAAATATGGGGCAAAGGAGGAAGATGTCATCTTGTATGGGCAATCAGTTGGGAGTGGACCTACATTAGATTTGGCTACTCGTTTACCTAACTTGAGGGCCATTGTTCTTCACAGTCCGATCTTGTCAGGCGTTCGAGTCATGTATCCCGTGAAGCGAACGTTCTGGTTCGACATTTATAAGAATATTGACAAAATACCATTGGTCAGTTGTCCAGTTCTTGTTATTCATGGAACTGATGATGACGTTGTCGACTGGTCCCATGGAAAGCAACTTTGGGATCTTTGTAAAGAAAAGTACGAGCCTTTATGGATTAAAGGAGGGAACCACTGTGACTTAGAGCTATACCCACAGTACATAAGACATCTCAAGAAGTTCGTGTCTGCCATCGAGAAATCACATCCTAGGAGTGCACCTGGACAAGCCACGAACCAGCTCGACGTTCCCAGAAACAGCACTGACGTTAGAGAAAAATCTAGACCCAGCACAGATCAAAGAGAGAAAACAACCATAACGAGATCTGATCAAACAGAAAAGCCGAGGACTAGCATGGACTGTGGTAATGGAGACAGGTCTAAAAAGATGTTAGACCAGCCAGAGAAAGCGAGGAACAGTATTGACCGGTCTGCCAACCGATCTTCTCATAGCTGA 1080 46.3 MGAVTSSMAAKFAFFPPNPPSYKVEEVEDGTGKLVMTEVAARGNFDVLKLSTKRGNQVVALYVKNVSATLTLLYSHGNAADLGQMYDLFVELSSHLRVNLIGYDYSGYGQSTGKVRNLIFLLPDPPSEQNTYADIEAVYRCLVEKYGAKEEDVILYGQSVGSGPTLDLATRLPNLRAIVLHSPILSGVRVMYPVKRTFWFDIYKNIDKIPLVSCPVLVIHGTDDDVVDWSHGKQLWDLCKEKYEPLWIKGGNHCDLELYPQYIRHLKKFVSAIEKSHPRSAPGQATNQLDVPRNSTDVREKSRPSTDQREKTTITRSDQTEKPRTSMDCGNGDRSKKMLDQPEKARNSIDRSANRSSHS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8213304 8217119 + Cp4.1LG13g08110.1 Cpe13g00994 480192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00994 359 Gene3D alpha/beta hydrolase 46 271 IPR029058 -
Cpe13g00994 359 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 312 - -
Cpe13g00994 359 Pfam Serine aminopeptidase, S33 72 188 IPR022742 -
Cpe13g00994 359 MobiDBLite consensus disorder prediction 294 359 - -
Cpe13g00994 359 MobiDBLite consensus disorder prediction 275 359 - -
Cpe13g00994 359 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 312 - -
Cpe13g00994 359 SUPERFAMILY alpha/beta-Hydrolases 54 272 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00994 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101208467 601.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02445 Cpe13g00994 CCT
Cpe02g01413 Cpe13g00994 CCT
Cpe01g02445 Cpe13g00994 ECH
Cpe02g01413 Cpe13g00994 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00602 Cpe-Chr3:3616978 Cpe13g00994 Cpe-Chr13:8213304 3.43E-08 dispersed
Cpe04g00513 Cpe-Chr4:5653505 Cpe13g00994 Cpe-Chr13:8213304 1.26E-115 dispersed
Cpe04g01238 Cpe-Chr4:10356378 Cpe13g00994 Cpe-Chr13:8213304 1.73E-133 dispersed
Cpe04g01594 Cpe-Chr4:12408763 Cpe13g00994 Cpe-Chr13:8213304 5.22E-157 dispersed
Cpe07g00102 Cpe-Chr7:531057 Cpe13g00994 Cpe-Chr13:8213304 5.50E-77 dispersed
Cpe13g00994 Cpe-Chr13:8213304 Cpe18g00881 Cpe-Chr18:8010732 3.39E-168 dispersed
Cpe14g00987 Cpe-Chr14:8341391 Cpe13g00994 Cpe-Chr13:8213304 1.83E-32 dispersed
Cpe01g02445 Cpe-Chr1:20287734 Cpe13g00994 Cpe-Chr13:8213304 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1004 . . . Bda11g01164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0516 . . . . . . . Bda11g01164 . . . . . Cmo04g02953 . . . . Car15g00221 Cpe13g00994 . . . . . . . . . . . . . . . . . Chy09g00382 .
Vvi14g972 . . . . . . Bma14g01391 . . . . . . . . . Cpe13g00994 Bhi06g00322 . . . . . . Cla11g00471 Cam11g0526 Cec11g0519 Cco11g0514 Clacu11g0648 Cmu11g0507 Cre11g0987 Cone11ag0346 Cone18ag1155 . . . Csa05g03058 . . . . . . . . . . . Cmo04g02953 Cmo15g00227 Cma04g02823 Cma15g00215 Car04g02719 Car15g00221 Cpe02g01413 Cpe01g02445 . . . . . . . . . . . . . . Lsi03g00193 . Chy09g00176 Cme09g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00994 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 1.388053 0.783411 0.689945 9.421456 8.600533 10.692393