Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00995 ATGATATCCACGTCTATGTGGAAAACCATTGCCAAGCAAGCTATTTCTAAGAATCGGCAGTTTCATCTTGATTGGCATTGCCTTTCCCGCTCCCATGGCGTTATGGGTCGTCTCAATGAATCTATAATTAGCGAGAAGTTAATATCTGATAAATTTGTTCTTAGTTCACTTCCGAAGTTCGGGATTTCGGAACTGGGTATTGGTCGGAGTGAAGTTTTGTCCCAGGAAGATTATGGAAGCCGATTCTGTTTTGGGTCTATGGGAGTTCGTATTGGGTTAAATGGGTCGTTCCCAAAAGGCTATTCTAGTGTTGCTGAGGCGGTTTCGTCAACAGATGTGGACGAAGATTCATCTATTGACGAAGAAATCCAGGAGTTATTGCAAGAGATGAGAAAAGAAGAGAAGAGGCAGGTTCAGCGTAGGAGAAGGAGGCTGAAAAGGGTGAAGGGAATGGGAGAACAGAAGTATCAAATGCTGAAGAGGCGGCAGGTGGCTATAGAGACTGAGGCGTGGAAACAGGCAGTTAAGGAGTACAAGGAGCTATTGATGGACATGTGTGAGCAGAAGCTAGCACCTAATTTGCCTTACATGAAGTCCTTGTTCCTTGGCTGGTTCGAGCCTTTGCGTGATGCTATAAGTAAAGAGCAAGAATTGATCCGCATAGGGAAGAACAGGGCTGCATATGCTCCTTATTTTGATCAACTATCTGCTGATATGATGTCGGTAGTCACGATGCATAAGTTGATAGGGCTGTTGATGATGGGACATGAGCACGGTAATGCCAGGGTTGTGCAGGCTGCTTGTGCAATTGGAGATGCTATTGAACAGGAGGTTAGAATTCACAGATTCTTGGAGAAAATGAAAAAGAAAAAGCACGACAAAGATAACGAGAACAATGACAAACCTGATTCTCAGCTGAAGGAACAAGAGTGGTTAAGGAAAAAAGTCACCAACTTGATTAAAAAGCAAAAGCTTCCGGCTGTAAGACATATAGTGAAGGGAACCGATGATTCAAAACCATGGGGCCCGGACGCCAAAGCAAAGGTTGGGAGCCGTCTTATTGAGTTGTTGACACAAACAGCGTACATACAACCTCCTGTCGATCAGTTGGCTGATGGTCCACCTGATATTCGTCCTGCATTTCGTCACTCATTTAGAATTGTGATGAAAGAAGCAAACAAAAACTCTAGCAGGAGATATGGTGTCATTGAATGTGACCCTTTAGTCGTCAACGGCTTAGAAAGGACTGCAAGACACATGGTGATTCCCTATATGCCAATGTTGGTGCCCCCAGTCAACTGGACTGGCTATGACAAAGGAGGACACATCTTCTTACCATCGTTTATCATGCGTACTCGTGGAGCCAACCAACAACGCGAAGCTGTTAAGAGGACCCCAAAGCAACAATTAACTCCTGTTTTTGAGGCCTTGGACACTCTTGGAAATACCAAATGGAGAATAAACAAAAAGATACTCAGTATAGTGGATAGAATATGGACCAGTGGAGGGCGCCTCGCTGATCTAGTGGATCGGGATGATGTTCCATTGCCAGAAAAACCTGATTCTGAAGATGAAACGCTGCTGAGAAAGTGGAAATGGAAAGTCAAATCTGTGAAGAAAGAAAATATGGAGAGGCATTCACAACGTTGTGACATAGAGCTTAAACTTGCTGTAGCACGCAAAATGAAGGACGAGGAAGGTTTTTACTATCCACATAACATAGACTTTCGAGGCCGTGCATATCCTATGCATCCATACTTGAATCATCTTGGTTCAGATCTTTGCCGAGGCATATTGGAGTTCGCAGAAGGTCGCCCGCTCAGGAAGTCTGGCCTACGTTGGCTTAAGATTCACTTGGCAAATCTATTTGCTGGGGGTGTTGATAAATTATCTCATGATGGTCGAATGACCTTTATTGACAATCACGTAGAAGATATATTTGACTCTGCTGATAGACCACTTGAAGGAAGACGCTGGTGGCTGAATGCGGAGGATCCATTTCAGTTTTTAGCTGGATGCATGAATCTTACTGAAGCTTTGAGAAACTCTTCTCCAGAAACAGTTATTTCACATATTCCAATACACCAGGATGGTTCTTGCAATGGGTTACAACACTACGCCGCTCTTGGACGAGACAAGTTAGGAGCAGCTGCTGTCAATCTGGCCGTGAGAGAGAAGCCTGCAGATGTGTACTCTGGAATAGCTGCTAGGGTTCTAGAAATCGTGCGAAAAGATGCACAAAGAGATCCAGAAACTTTTCCAGATGCATTGCGTGCAAAAACATTAATAGATCAGGTGGACAGAAAATTGGTGAAGCAAACAGTGATGACATCGGTTTATGGCGTCACCTATATTGGCGCTCGTGAGCAGATCAAAAGGAGGCTGAAGGAGCGTGCTGTCATATCTGATGATACAGAGCTTTTTGGCTGTGCTTGCTATGCTGCCAAGACCACGTTAACGGCACTAGGGGAAATGTTCGAAGCAGCCCGTGGGATCATGAGTTGGCTAGGAGACTGTGCAAAAATCATTGCCTCTGAAAATCAACCTGTGCGATGGACTACACCTCTTGGACTACCTGTTGTGCAACCGTATCGCAAGTTGGGAAAGCATATTGTCAAAACTTCTCTCCAAGTTTTGACACTACAACAAGAAACAGACAAGGTCTTGGTAAAGAGGCAGCGGACAGCTTTCCCACCAAATTTTGTGCACTCCCTTGATGGTTCTCATATGATGATGACTGCTGTTGCTTGCAAAAAGGCAGGTTTGAATTTTGCAGGGGTTCATGATTCGTACTGGACACACGCTTGCGACGTGGATGAAATGAACAGAATACTTAGAGAGAAGTTCGTCGAACTTTACGAGACTCCAATACTCGAAAATTTATTGGAGGGCTTTCAGCAATCTTTTCCTGCGTTGGACTTTCCTCCTCTACCTGAACGGGGAGAGTTAGATCTAAAGGAAGTTCTGGAGTCGCCTTACTTCTTTAACTAA 2991 44.43 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIISEKLISDKFVLSSLPKFGISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSFPKGYSSVAEAVSSTDVDEDSSIDEEIQELLQEMRKEEKRQVQRRRRRLKRVKGMGEQKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSADMMSVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQEWLRKKVTNLIKKQKLPAVRHIVKGTDDSKPWGPDAKAKVGSRLIELLTQTAYIQPPVDQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVNGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLRWLKIHLANLFAGGVDKLSHDGRMTFIDNHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRNSSPETVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLAVREKPADVYSGIAARVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERAVISDDTELFGCACYAAKTTLTALGEMFEAARGIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGKHIVKTSLQVLTLQQETDKVLVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEGFQQSFPALDFPPLPERGELDLKEVLESPYFFN 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8217381 8226511 + Cp4.1LG13g08100.1 Cpe13g00995 480193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00995 996 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 766 780 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe13g00995 996 Gene3D - 605 683 - -
Cpe13g00995 996 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 693 704 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe13g00995 996 SUPERFAMILY DNA/RNA polymerases 146 996 IPR043502 -
Cpe13g00995 996 Pfam DNA-directed RNA polymerase N-terminal 162 482 IPR029262 -
Cpe13g00995 996 Gene3D - 483 565 IPR024075 GO:0003899
Cpe13g00995 996 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 6 996 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe13g00995 996 PANTHER DNA-DIRECTED RNA POLYMERASE 6 996 - -
Cpe13g00995 996 SMART RPOL_N_2 161 482 IPR029262 -
Cpe13g00995 996 Pfam DNA-dependent RNA polymerase 606 996 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cpe13g00995 996 Gene3D - 135 482 IPR037159 -
Cpe13g00995 996 Coils Coil 116 143 - -
Cpe13g00995 996 Gene3D - 714 903 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00995 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217508 1586.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00242 Cpe13g00995 CCT
Cpe09g00242 Cpe13g00995 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00701 Cpe-Chr7:5868066 Cpe13g00995 Cpe-Chr13:8217381 0 dispersed
Cpe09g00242 Cpe-Chr9:1398637 Cpe13g00995 Cpe-Chr13:8217381 0 dispersed
Cpe11g00834 Cpe-Chr11:6763574 Cpe13g00995 Cpe-Chr13:8217381 0 dispersed
Cpe13g00995 Cpe-Chr13:8217381 Cpe09g00238 Cpe-Chr9:1371774 4.62E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
Vvi14g971 . Blo11g00328 . . . . . . . . . . . . Sed11g2062 . Cpe13g00995 Bhi06g00325 Tan11g0405 Cmetu09g1013 . . . . Cla11g00472 Cam11g0529 Cec11g0522 Cco11g0516 Clacu11g0650 Cmu11g0510 Cre11g0990 . . Cone2ag0479 Cone16ag0527 . Csa05g03059 . . . . Bda07g01042 . . . . . . . . . . . Car15g00220 . . . . . . . . . . . . . . . . Lsi03g00194 . Chy09g00175 Cme09g00190
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00995 Cpe_Chr13 FPKM 32.453217 34.784279 2.014825 2.090838 63.686489 63.627186 63.678051 0.154031 0.130918 0.137932