Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00999 ATGCAGCCTAGTGAAGTCACAAGTCTCCAATATCTCATCCCCTCCAATTTATCTCCATATGCTACTCACTTTCCCATGGCTCAGAACAACTTATCTACAATGCAACTTAATGAACTCTCCAATCCTCTATATAACTTCCAAGGTTCTTCTCAGTTCCAAGATTTTAATCGACATCCATGCTTGAGTAGCAATTCAACTTCTGATGAAGCAGATGAGCAACAGCAAAGCCTCATTGACGAGAGGAAGCAGAGAAGGATGGTATCCAATAGAGAGTCGGCACGCCGGTCACGTATGCGCAAACAGAAGCATTTGGACGAGCTTTGGTCTCAAGTGGTTTGGCTTCGGAATGAGAACCATCAGCTTATAGATAAGTTGAACCAAGTTTCAGACTGCCATGACAAGGTTGTTCAAGAAAATGCTCAACTCAAAGAGCAGACTTCTGAACTCCGTCAAATGATCACAGAACTACAGGTCAATAATCCTTACCCCAAATTCAGAGAACTTGAAGAAATCCCCCCCAACACACCATCCGAGAGCTGA 540 43.52 MQPSEVTSLQYLIPSNLSPYATHFPMAQNNLSTMQLNELSNPLYNFQGSSQFQDFNRHPCLSSNSTSDEADEQQQSLIDERKQRRMVSNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNQVSDCHDKVVQENAQLKEQTSELRQMITELQVNNPYPKFRELEEIPPNTPSES 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8255848 8256387 + Cp4.1LG13g07930.1 Cpe13g00999 480197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00999 179 MobiDBLite consensus disorder prediction 55 100 - -
Cpe13g00999 179 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 175 IPR044521 -
Cpe13g00999 179 Pfam bZIP transcription factor 81 130 IPR004827 GO:0003700|GO:0006355
Cpe13g00999 179 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Cpe13g00999 179 Gene3D - 79 135 - -
Cpe13g00999 179 PANTHER BZIP PROTEIN (ATBZIP48) 1 175 - -
Cpe13g00999 179 CDD bZIP_plant_GBF1 82 133 IPR045314 GO:0003700|GO:0006355
Cpe13g00999 179 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Cpe13g00999 179 SUPERFAMILY Leucine zipper domain 81 130 IPR046347 GO:0003700|GO:0006355
Cpe13g00999 179 MobiDBLite consensus disorder prediction 74 100 - -
Cpe13g00999 179 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Cpe13g00999 179 Coils Coil 132 159 - -
Cpe13g00999 179 MobiDBLite consensus disorder prediction 55 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00999 - - - csv:101208954 323.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01390 Cpe13g00999 CCT
Cpe09g00249 Cpe13g00999 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00960 Cpe-Chr3:7401064 Cpe13g00999 Cpe-Chr13:8255848 2.68E-70 dispersed
Cpe13g00471 Cpe-Chr13:4915710 Cpe13g00999 Cpe-Chr13:8255848 8.91E-42 dispersed
Cpe13g00999 Cpe-Chr13:8255848 Cpe07g00398 Cpe-Chr7:2576484 4.63E-21 dispersed
Cpe01g02450 Cpe-Chr1:20317499 Cpe13g00999 Cpe-Chr13:8255848 3.49E-114 wgd
Cpe13g00999 Cpe-Chr13:8255848 Cpe09g00249 Cpe-Chr9:1441424 7.68E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001521 7 2 3 4 4 2 3 2 2 1 2 2 4 2 2 2 2 0 3 2 2 2 2 2 2 2 2 3 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50457 PF00170 bZIP_1 1.70E-13 CL0018 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00999 Cpe_Chr13 FPKM 13.538223 13.086654 42.392212 42.68895 337.562866 321.768311 351.110962 2.002309 2.079396 1.650297