Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01002 ATGCTGTCTCGACAAAAAGAAAAAAGCTTAGCCCAGCCCCCATTTGCAATAGTTCCAGCCTTCTGCTTGTCTTGTGTCTGGTTTTTGGTACATGAGCATTTACTGGGAATGAAGAGAACTGAGGCTACTGCTTCTTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTCTGATGGGTATAAAAGCTTCACTTCAAGATCCCCATGGCGTGCTTGAGAATTGGGATGGAGACTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCCCCTGACAGCCTTGTCATTGGCCTGTTAATCCTCTTCTCCACCTTCTTCTTTAAGAATTTGAACTCAAAATTTGTAGATGAAGAAGGGACTCCAAGTCAGAACCTGTCTGGGACTCTTTCTTCAAGCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTACAGAACAATAATATTACAGGCCCAATCCCCCCAGAGCTTGAGAGGCTCTCAAAGCTCCAAACACTTGATCTATCAAGCAATTTCTTCACAGGGAAAATTCCTTCTTCTTTAGGCCATTTGAGAAGTCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTGTAGCTAACATGACACAGCTTGTGTTTCTTGATGTGTCTTATAACAATATCAGTGGTCCTCTCCCCAGATTTCCCAGCAAAACGTTCAACATTGTTGGAAATCCTCTGATCTGTGCAACTGGGTCCGAGGTCGGTTGCCACGGTTCAACTCTAATGCCCATGTCCATGAACTTGAACAGTACACAAACTGGTTTACCTGCTGTGAGATTGAAAAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTATATTTGGACTGTTCATATGGTGGCGAAGACGAAGCAATCGCCCGACGTTTTTCGATGTAAAAGACGGACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGACAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTAGAGGTGATATCCAGTTTCAGACTGAAGTCGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCCGACTGTACGGGTTTTGCAACACACCAACCGAAAGGATTCTTGTTTACCCGTATATGTCTAATGGAAGCGTTGCATCACGTCTCAAAGGGCAGAAAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGAATGGGTGAAGAAGATTCACCAGGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAGCTAGAGGAGATGGTTCAAGTGGCTCTGTTGTGTACACAATACCAACCAGGACACAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTCAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCTCATGATTTCTCTTCATCTGACAGATACTCTGATCTCACAGATGACTCATCCTTGTTGGTCCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1722 43.84 MLSRQKEKSLAQPPFAIVPAFCLSCVWFLVHEHLLGMKRTEATASCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPDSLVIGLLILFSTFFFKNLNSKFVDEEGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPELERLSKLQTLDLSSNFFTGKIPSSLGHLRSLQYLRLNNNSLSGVIPMSVANMTQLVFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEVGCHGSTLMPMSMNLNSTQTGLPAVRLKSHKMALTFGLSLACLCLIVLIFGLFIWWRRRSNRPTFFDVKDGQHEEISLGNLRRFQFRQLQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGDIQFQTEVEMISLAVHRHLLRLYGFCNTPTERILVYPYMSNGSVASRLKGQKALEFGKAANQKGGILEWVKKIHQEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYQPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8267740 8274891 - Cp4.1LG13g07860.1 Cpe13g01002 480200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01002 573 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 447 573 - -
Cpe13g01002 573 Gene3D Phosphorylase Kinase; domain 1 329 436 - -
Cpe13g01002 573 Gene3D Ribonuclease Inhibitor 67 269 IPR032675 -
Cpe13g01002 573 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 43 449 - -
Cpe13g01002 573 Pfam Leucine rich repeat N-terminal domain 68 107 IPR013210 -
Cpe13g01002 573 Gene3D Transferase(Phosphotransferase) domain 1 445 542 - -
Cpe13g01002 573 SUPERFAMILY Protein kinase-like (PK-like) 350 527 IPR011009 -
Cpe13g01002 573 ProSiteProfiles Protein kinase domain profile. 360 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g01002 573 SUPERFAMILY L domain-like 69 252 - -
Cpe13g01002 573 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 43 449 - -
Cpe13g01002 573 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 447 573 - -
Cpe13g01002 573 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Cpe13g01002 573 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Cpe13g01002 573 Pfam Protein kinase domain 361 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00254 Cpe13g01002 CCT
Cpe01g02453 Cpe13g01002 CCT
Cpe09g00254 Cpe13g01002 ECH
Cpe01g02453 Cpe13g01002 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01385 Cpe-Chr1:8342384 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe04g01269 Cpe-Chr4:10531399 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe07g00017 Cpe-Chr7:106748 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe11g00021 Cpe-Chr11:117034 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe13g01002 Cpe-Chr13:8267740 Cpe19g01075 Cpe-Chr19:7333938 2.43E-24 dispersed
Cpe01g02453 Cpe-Chr1:20327024 Cpe13g01002 Cpe-Chr13:8267740 0 wgd
Cpe13g01002 Cpe-Chr13:8267740 Cpe09g00254 Cpe-Chr9:1462093 5.43E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62808 PF00069 Pkinase 2.20E-16 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01002 - - cpep:111808464 844.728