Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01035 ATGAGAAGGCTACTGGGGCTGTTCGTCTTGTTCGTTGTGGCTCCGGTGTGGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGACCCTAAGGGGAGACTCGCGTCGTGGAATGAAGATGACGATAACCCCTGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCGATCTTGATGGCTTCTCTCTCAATGGAAGGCTTGGCCGTGGTCTTCTTCAGCTGCAGTTTCTTCGTAAACTATCTCTTTCCAACAACAATCTTACTGGAAATTTGAGTCCCAATAATGCTCGCTTTGAAAATCTGCGAGTGGTGGATTTAAGCGGCAACAGTTTTCATGGGATGATTCCGGACGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAACTTTCAGGGAAAATCCCCGAAAGTTTGGGCTCTTGCGTCAGTCTTGCTGCTGTTAATTTATCTTATAATCAGTTTTCTGGTTCATTACCTTCTGGGATTTGGTCCTTGACTGGGCTTCGGTCCTTGGATTTATCTGGTAATGTTTTGGAAGGTGAAATTCCACTGGAGGTGAAGAGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCCGGACAGATCCCAGGTGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACATTCCGGCGACAATGCAGCGGCTTAGTTTATGCAGTACTCTTAACTTAAGAAGAAACCTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAATCTTGGATCTTTCAGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTCAGGAAACTTCAAAATCTGAAGGTTTTGAATCTTTCTGAGAATGGTTTAATTGGCAGCTTGGCAGGGTCCGTACTTCCTTCTCAAAACCTTTCAGCCATGGATCTCGGCCACAGCTCTCTCACCGGTGTGCTTCCGGCCTGGATTCTGAAGCTGGGTTCTCAAAATGTATTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACACCTGTGGGAAAAGCTCTTGTTAATCTTCAAGTGTTGGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGAGATTGGGATATTAAGTAACTTGCAGGTGTTGAACCTGTGTAAGAACTCATTTGCTGGGGCTATTCCAGAGAGTGTTGGAGGCATGAAGGGCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCGAAACGCTCGGCGGAGACGAATCATTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAATTCGATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGGTTAAGTGGCTCCATACCAGCAGCATTGTCTCAACTGACCAATCTTCAAGTTGTGGACTTATCAGCAAACAATCTCAGCGGTGCACTGCCAAAACAGTTAGCCAATCTTCCCAACCTTCTTTTATTCAACATTTCTCACAACAATCTGCAGGGAGAACTGCCGGCAGGTGGCTTTTTCAATACAATTTCCCCTTCCTCTGTGGCGGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAAAAGTCTTGCCCTGGTGTCCTTCCAAAGCCTATTGTTCTAAACCCCAACTCATCTTCTGACTCCGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATTCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTTGTCGGTGTAGTTGCGATCACCGTCCTTAACTTCCATGTTCGGTCATCTGCAAATCGTCCAGAAGCAGCCATCACGTTTTCTGGGGGAGATGACTTCAGCAACTCTCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGATCCTGACTTCAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGCGGAGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCACCCGGTTGCAATAAAAAAGCTCACAGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAATTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTTTCATGGAATGAAAGATTTAACATAATCCTCAAAACCGCGAAAAGCTTGGCTCATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTTCTGATTGATGGTTCAGGGGAGCCTAAAGTTGGAGATTTTGGCCTAGCAAGGTTGTTGCCAATGCTTGATCGGTACGTGTTGAGCAGTAAGATACAGAGTGCACTTGGCTATATGGCACCCGAATTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAGGTGGTAACGGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGAGCGCTGGAAGAAGGTGGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGAAATTTCCCATCTGAGGAGGCCATACCAGTAGTGAAACTAGGATTGATATGCACCTCACAGTTTTCTTCTGTATGTTTTGAGTTTTCCGGATTCCTCTTCACCGGCTTCCAATTCGGGTCCCTAATCGAAAATCTTAACTGTTCACTTATCTTTCATATCATCTATCCATTTCAAGATCTTGATAGGAGAAGCATCAGCTTGTACAATCTCCTTTGA 2961 44.88 MRRLLGLFVLFVVAPVWVRSLNPPLNDDVLGLIVFKADIEDPKGRLASWNEDDDNPCNWVGVKCNPRSNRVVELDLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNSFHGMIPDDFFRQCGSLRVISLAKNKLSGKIPESLGSCVSLAAVNLSYNQFSGSLPSGIWSLTGLRSLDLSGNVLEGEIPLEVKSMNNLRAINLGKNRFSGQIPGGIGSCLLLRSVDLSENSFSGDIPATMQRLSLCSTLNLRRNLFEGKVPEWIGEMEGLEILDLSGNRFSGPVPSSFRKLQNLKVLNLSENGLIGSLAGSVLPSQNLSAMDLGHSSLTGVLPAWILKLGSQNVLPSDVKRSSLSTPVGKALVNLQVLDLSHNALSGEISPEIGILSNLQVLNLCKNSFAGAIPESVGGMKGLVFLDLSENQLNGSIPETLGGDESLKELRLEKNLLEGEVPNSIGNCSSLVTLDISENRLSGSIPAALSQLTNLQVVDLSANNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVLNFHVRSSANRPEAAITFSGGDDFSNSPTTDANSGKLVMFSGDPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILKTAKSLAHLHQMNIIHYNIKSSNVLIDGSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGGVEECIDGRLQRNFPSEEAIPVVKLGLICTSQFSSVCFEFSGFLFTGFQFGSLIENLNCSLIFHIIYPFQDLDRRSISLYNLL 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8499842 8503579 + Cp4.1LG13g07640.1 Cpe13g01035 480233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01035 986 Gene3D Phosphorylase Kinase; domain 1 675 757 - -
Cpe13g01035 986 PRINTS Leucine-rich repeat signature 500 513 - -
Cpe13g01035 986 PRINTS Leucine-rich repeat signature 431 444 - -
Cpe13g01035 986 SMART LRR_sd22_2 189 218 - -
Cpe13g01035 986 SMART LRR_sd22_2 500 526 - -
Cpe13g01035 986 SMART LRR_sd22_2 92 121 - -
Cpe13g01035 986 SMART LRR_sd22_2 285 314 - -
Cpe13g01035 986 SMART LRR_sd22_2 380 409 - -
Cpe13g01035 986 Gene3D Ribonuclease Inhibitor 286 573 IPR032675 -
Cpe13g01035 986 ProSiteProfiles Leucine-rich repeat profile. 382 404 IPR001611 GO:0005515
Cpe13g01035 986 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Cpe13g01035 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 3 938 - -
Cpe13g01035 986 SUPERFAMILY Protein kinase-like (PK-like) 684 927 IPR011009 -
Cpe13g01035 986 SUPERFAMILY RNI-like 267 548 - -
Cpe13g01035 986 Pfam Protein kinase domain 684 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g01035 986 Gene3D Transferase(Phosphotransferase) domain 1 758 942 - -
Cpe13g01035 986 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Cpe13g01035 986 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cpe13g01035 986 SMART LRR_typ_2 428 452 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 213 237 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 116 140 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 189 212 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 500 523 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 380 404 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 285 308 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 309 333 IPR003591 -
Cpe13g01035 986 SMART LRR_typ_2 524 548 IPR003591 -
Cpe13g01035 986 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cpe13g01035 986 SUPERFAMILY L domain-like 43 358 - -
Cpe13g01035 986 ProSiteProfiles Protein kinase domain profile. 681 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g01035 986 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Cpe13g01035 986 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Cpe13g01035 986 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cpe13g01035 986 Pfam Leucine rich repeat 405 465 IPR001611 GO:0005515
Cpe13g01035 986 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 938 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00963 Cpe13g01035 CCT
Cpe01g00963 Cpe13g01035 ECH
Cpe01g00084 Cpe13g01035 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00084 Cpe-Chr1:504888 Cpe13g01035 Cpe-Chr13:8499842 0 dispersed
Cpe01g00963 Cpe-Chr1:5707041 Cpe13g01035 Cpe-Chr13:8499842 0 dispersed
Cpe03g01247 Cpe-Chr3:10112947 Cpe13g01035 Cpe-Chr13:8499842 7.96E-22 dispersed
Cpe08g00782 Cpe-Chr8:6229489 Cpe13g01035 Cpe-Chr13:8499842 4.94E-168 dispersed
Cpe13g01035 Cpe-Chr13:8499842 Cpe05g00090 Cpe-Chr5:430776 1.36E-116 dispersed
Cpe13g00250 Cpe-Chr13:1957208 Cpe13g01035 Cpe-Chr13:8499842 1.12E-08 transposed
Cpe17g00496 Cpe-Chr17:4056437 Cpe13g01035 Cpe-Chr13:8499842 4.34E-55 transposed
Cpe13g01035 Cpe-Chr13:8499842 Cpe03g00011 Cpe-Chr3:53564 0 wgd
Cpe13g01035 Cpe-Chr13:8499842 Cpe08g01262 Cpe-Chr8:9123959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62810 PF00069 Pkinase 2.30E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01035 - - csv:101217024 1630.54