Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01039 ATGGTTTCCTCACCAATCTCTGCTTTTTCTGTTCTTTTCCTACTTTTTATCCCTGCAATCTCCGCCGATTACGGCGGAGTGCAGTCCGGCCACGCTACCTTTTATGGCGGTGGAGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTGAGTACGGCTCTGTTTAACAATGGGCTGAGCTGTGGGTCTTGCTATGAAATCACTTGTAGCAGTGATCCCAAATGGTGTCTTCCTGGAAAAATCATTGTCACTGCCACTAATTTCTGTCCCCCAAACTTGGCTCTCTCCAACAACAATGGCGGCTGGTGTAACCCTCCTCTGCAACACTTCGACTTGGCAGAGCCTGCTTTTCTACAAATCGCTCAGTACCATGCCGGGATTGTCCCTGTCTCCTTCCGAAGAGTACCATGCGTGAAGAAGGGAGGGATAAGGTTGACGATAAACGGCCATTCATACTTCAACTTGGTACTGATTACCAACGTGGGCGGCGCCGGCGACGTCCACTCGGTGTCAATCAAAGGGTCCAAAACTGGATGGCAAGCGATGTCCAGAAATTGGGGACAGAACTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAATCACCACCAGCGACGGCCGCACTGTCACCAGCTACAACGCCGTTCCGGCCAACTGGCAGTTCGGCCAGACATTCGAGGCGGGCCAGTTCTGA 750 52.53 MVSSPISAFSVLFLLFIPAISADYGGVQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCSSDPKWCLPGKIIVTATNFCPPNLALSNNNGGWCNPPLQHFDLAEPAFLQIAQYHAGIVPVSFRRVPCVKKGGIRLTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQITTSDGRTVTSYNAVPANWQFGQTFEAGQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8521044 8522464 + Cp4.1LG13g07620.1 Cpe13g01039 480237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01039 249 PANTHER EXPANSIN 6 249 - -
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cpe13g01039 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cpe13g01039 249 Gene3D - 17 152 IPR036908 -
Cpe13g01039 249 Gene3D - 156 249 IPR036749 -
Cpe13g01039 249 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Cpe13g01039 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cpe13g01039 249 PANTHER EXPANSIN-A15 6 249 IPR002963 GO:0009664
Cpe13g01039 249 SMART dpbb_1 62 147 IPR007112 -
Cpe13g01039 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Cpe13g01039 249 SUPERFAMILY Barwin-like endoglucanases 13 175 IPR036908 -
Cpe13g01039 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cpe13g01039 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cpe13g01039 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Cpe13g01039 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00643 Cpe-Chr4:6608027 Cpe13g01039 Cpe-Chr13:8521044 8.91E-26 dispersed
Cpe04g01494 Cpe-Chr4:11841897 Cpe13g01039 Cpe-Chr13:8521044 2.61E-132 dispersed
Cpe05g00925 Cpe-Chr5:6080077 Cpe13g01039 Cpe-Chr13:8521044 8.86E-124 dispersed
Cpe13g01039 Cpe-Chr13:8521044 Cpe16g00619 Cpe-Chr16:6736333 3.72E-124 dispersed
Cpe02g01346 Cpe-Chr2:11913145 Cpe13g01039 Cpe-Chr13:8521044 2.90E-134 transposed
Cpe01g00826 Cpe-Chr1:4910298 Cpe13g01039 Cpe-Chr13:8521044 5.53E-83 transposed
Cpe01g02482 Cpe-Chr1:20482482 Cpe13g01039 Cpe-Chr13:8521044 2.69E-83 wgd
Cpe01g00990 Cpe-Chr1:5865470 Cpe13g01039 Cpe-Chr13:8521044 2.45E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01039 - K20628 csv:101217496 470.314