Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01047 ATGGACGGAGAATTGCAGGAGGTTGATGAGATAAAGAGGGAGGTGGTTGAAGGGTTTTATCCATTAATGGGAAGAAGGCAGATATTGAGTCAAGCTGGGGCGTTGAATACCATAACGCCATGTGCGGCCTGTAAGCTATTAAGAAGAAGGTGCGCTCAAGAATGCCCATTTTCTCCATATTTCTCTCCCCATGAACCCCACAAGTTTGCTTCGGTCCATAAGGTTTTTGGTGCCAGCAACGTGGCTAAGATGCTCATGGAAGTGCCGGAGAGTCAAAGAGCGGACGCCGCAAACAGCCTAGTGTATGAAGCCAATCTGAGGCTGAGGGATCCAGTGTACGGCTGCATGGGCGCCATTTCTGCTCTCCAACACCAACTTCAAACCTTACAAGCTGACCTCAACGCTATAAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATCATCCCTTCTCCTTCCTCCTCTTCCTCTTCCCACATCGCTTTCATTTCCGCTACCGGGCTCGTATCCACCACCGCAACCCCGCCTACTGCCCCGCCAACTCCGCCGCCTTCTCAGCCACCTCCGCTCTCTCTTCCCCCGCCTCTTCCTCCCTCCTCCTCCTCCTCCTCCATCTTTTCTCCGCCCATCAGCACCACCACTGCCCCTCAACTAATTAACCCTATCTCAACCCAACATATTCCTTACTTTGGTTGA 699 51.36 MDGELQEVDEIKREVVEGFYPLMGRRQILSQAGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQADLNAIRTEILKYKYREAIIPSPSSSSSSHIAFISATGLVSTTATPPTAPPTPPPSQPPPLSLPPPLPPSSSSSSIFSPPISTTTAPQLINPISTQHIPYFG 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8546645 8550134 + Cp4.1LG13g07450.1 Cpe13g01047 480245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01047 232 Pfam Lateral organ boundaries (LOB) domain 40 136 IPR004883 -
Cpe13g01047 232 MobiDBLite consensus disorder prediction 176 203 - -
Cpe13g01047 232 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Cpe13g01047 232 MobiDBLite consensus disorder prediction 172 219 - -
Cpe13g01047 232 MobiDBLite consensus disorder prediction 204 219 - -
Cpe13g01047 232 PANTHER BNAA03G19070D PROTEIN 24 232 - -
Cpe13g01047 232 Coils Coil 119 139 - -
Cpe13g01047 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 232 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00996 Cpe13g01047 CCT
Cpe01g00996 Cpe13g01047 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00091 Cpe-Chr1:546748 Cpe13g01047 Cpe-Chr13:8546645 4.65E-59 dispersed
Cpe13g01047 Cpe-Chr13:8546645 Cpe16g00033 Cpe-Chr16:429658 1.05E-46 dispersed
Cpe01g00996 Cpe-Chr1:5909954 Cpe13g01047 Cpe-Chr13:8546645 4.74E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50461 PF03195 LOB 2.00E-40 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01047 - - mcha:111006433 244.588