Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g01072 | ATGGCAACGACGGAGAGCACGGTCTTGCAATTTTCGCAGTCTTCTAACACGTTATCTGCGAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGTCCTGACCAGGCCGATCGAGTAATCGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAGGTTATCGTTGGATGGTACTCAACTGGTACGGGTGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACCGTTGATACTGGATTTAACAATGGCGAAGGAACAATAAAAGCCTATATCTCTGTCAATTTGTCCCTCGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAGGCAGACAACACGATAGGGAGATTTCTTGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTCGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTATCAAGTATCACCAGAACACAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA | 858 | 43.12 | MATTESTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFNNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8693610 | 8699421 | + | Cp4.1LG13g07250.1 | Cpe13g01072 | 480270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g01072 | 285 | Gene3D | Cytidine Deaminase, domain 2 | 7 | 186 | - | - | |
Cpe13g01072 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 17 | 284 | - | - | |
Cpe13g01072 | 285 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 18 | 281 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe13g01072 | 285 | Pfam | Maintenance of mitochondrial structure and function | 172 | 278 | IPR024969 | - | |
Cpe13g01072 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F | 17 | 284 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe13g01072 | 285 | CDD | MPN_eIF3f | 21 | 278 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe13g01072 | 285 | Coils | Coil | 275 | 285 | - | - | |
Cpe13g01072 | 285 | ProSiteProfiles | MPN domain profile. | 20 | 151 | IPR037518 | - | |
Cpe13g01072 | 285 | SMART | pad1_6 | 19 | 150 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cpe13g01072 | 285 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 18 | 121 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g02524 | Cpe13g01072 | CCT | |
Cpe01g02524 | Cpe13g01072 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g01072 | Cpe-Chr13:8693610 | Cpe19g00275 | Cpe-Chr19:2285836 | 3.69E-30 | dispersed | |
Cpe01g02524 | Cpe-Chr1:20708263 | Cpe13g01072 | Cpe-Chr13:8693610 | 0 | wgd | |
Cpe13g01072 | Cpe-Chr13:8693610 | Cpe03g00064 | Cpe-Chr3:355220 | 3.38E-26 | wgd | |
Cpe13g01072 | Cpe-Chr13:8693610 | Cpe08g01213 | Cpe-Chr8:8869884 | 1.36E-33 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g01072 | K03249 | - | csv:101205957 | 556.599 |