Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01072 ATGGCAACGACGGAGAGCACGGTCTTGCAATTTTCGCAGTCTTCTAACACGTTATCTGCGAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGTCCTGACCAGGCCGATCGAGTAATCGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAGGTTATCGTTGGATGGTACTCAACTGGTACGGGTGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACCGTTGATACTGGATTTAACAATGGCGAAGGAACAATAAAAGCCTATATCTCTGTCAATTTGTCCCTCGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAGGCAGACAACACGATAGGGAGATTTCTTGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTCGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTATCAAGTATCACCAGAACACAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 43.12 MATTESTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFNNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8693610 8699421 + Cp4.1LG13g07250.1 Cpe13g01072 480270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01072 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cpe13g01072 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
Cpe13g01072 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe13g01072 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cpe13g01072 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe13g01072 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe13g01072 285 Coils Coil 275 285 - -
Cpe13g01072 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cpe13g01072 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe13g01072 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02524 Cpe13g01072 CCT
Cpe01g02524 Cpe13g01072 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01072 Cpe-Chr13:8693610 Cpe19g00275 Cpe-Chr19:2285836 3.69E-30 dispersed
Cpe01g02524 Cpe-Chr1:20708263 Cpe13g01072 Cpe-Chr13:8693610 0 wgd
Cpe13g01072 Cpe-Chr13:8693610 Cpe03g00064 Cpe-Chr3:355220 3.38E-26 wgd
Cpe13g01072 Cpe-Chr13:8693610 Cpe08g01213 Cpe-Chr8:8869884 1.36E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01072 K03249 - csv:101205957 556.599