Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g01080 | ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCACGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGATGATGTGCGGAAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCACCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCAACAGAGCAACGCAACGACTCAAACGACGCAACGACAGCAACCGCAGCAGCAGCAGCAGCTGTGGTAGTGCCATAG | 525 | 52.0 | MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8732164 | 8734772 | + | Cp4.1LG13g07230.1 | Cpe13g01080 | 480278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g01080 | 174 | PANTHER | ZINC FINGER, RING-CH-TYPE | 18 | 167 | - | - | |
Cpe13g01080 | 174 | SUPERFAMILY | RING/U-box | 81 | 138 | - | - | |
Cpe13g01080 | 174 | SMART | ringv_2 | 83 | 136 | IPR011016 | GO:0008270 | |
Cpe13g01080 | 174 | CDD | RING_CH-C4HC3_MARCH | 84 | 136 | - | - | |
Cpe13g01080 | 174 | PANTHER | OS01G0850200 PROTEIN | 18 | 167 | - | - | |
Cpe13g01080 | 174 | Pfam | RING-variant domain | 84 | 135 | IPR011016 | GO:0008270 | |
Cpe13g01080 | 174 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 146 | IPR013083 | - | |
Cpe13g01080 | 174 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 76 | 142 | IPR011016 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g02534 | Cpe13g01080 | CCT | |
Cpe01g02534 | Cpe13g01080 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g01080 | Cpe-Chr13:8732164 | Cpe19g00305 | Cpe-Chr19:2654666 | 5.18E-38 | dispersed | |
Cpe19g00111 | Cpe-Chr19:899755 | Cpe13g01080 | Cpe-Chr13:8732164 | 5.01E-09 | dispersed | |
Cpe10g01253 | Cpe-Chr10:9691445 | Cpe13g01080 | Cpe-Chr13:8732164 | 1.29E-09 | transposed | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe13g01080 | Cpe-Chr13:8732164 | 1.69E-87 | wgd | |
Cpe13g01080 | Cpe-Chr13:8732164 | Cpe03g00081 | Cpe-Chr3:432033 | 4.49E-49 | wgd | |
Cpe13g01080 | Cpe-Chr13:8732164 | Cpe08g01193 | Cpe-Chr8:8780053 | 3.19E-53 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g01080 | - | - | cpep:111808933 | 320.472 |