Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01080 ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCACGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGATGATGTGCGGAAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCACCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCAACAGAGCAACGCAACGACTCAAACGACGCAACGACAGCAACCGCAGCAGCAGCAGCAGCTGTGGTAGTGCCATAG 525 52.0 MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASDDVRKSRAEIVGAAAEKRRGSSVSECSVEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAAAVVVP 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8732164 8734772 + Cp4.1LG13g07230.1 Cpe13g01080 480278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01080 174 PANTHER ZINC FINGER, RING-CH-TYPE 18 167 - -
Cpe13g01080 174 SUPERFAMILY RING/U-box 81 138 - -
Cpe13g01080 174 SMART ringv_2 83 136 IPR011016 GO:0008270
Cpe13g01080 174 CDD RING_CH-C4HC3_MARCH 84 136 - -
Cpe13g01080 174 PANTHER OS01G0850200 PROTEIN 18 167 - -
Cpe13g01080 174 Pfam RING-variant domain 84 135 IPR011016 GO:0008270
Cpe13g01080 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Cpe13g01080 174 ProSiteProfiles Zinc finger RING-CH-type profile. 76 142 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02534 Cpe13g01080 CCT
Cpe01g02534 Cpe13g01080 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01080 Cpe-Chr13:8732164 Cpe19g00305 Cpe-Chr19:2654666 5.18E-38 dispersed
Cpe19g00111 Cpe-Chr19:899755 Cpe13g01080 Cpe-Chr13:8732164 5.01E-09 dispersed
Cpe10g01253 Cpe-Chr10:9691445 Cpe13g01080 Cpe-Chr13:8732164 1.29E-09 transposed
Cpe01g02534 Cpe-Chr1:20756211 Cpe13g01080 Cpe-Chr13:8732164 1.69E-87 wgd
Cpe13g01080 Cpe-Chr13:8732164 Cpe03g00081 Cpe-Chr3:432033 4.49E-49 wgd
Cpe13g01080 Cpe-Chr13:8732164 Cpe08g01193 Cpe-Chr8:8780053 3.19E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01080 - - cpep:111808933 320.472