Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01100 ATGCGCGCACACACACACATATATATATATATACACATCTATATATATTCTTCAACCTTTTTCCATCTTCATATATATTTTTATTTTAATTCAAATCCCATTTTTCACCGCAATAACATGGCTGAGATATGCTTTGCTGGGGATGGCGAGCCCTCTCCCCGACCAAAATCTCGACCCCGAAACTCGGCTCGCCGGACAAAGGAGTTTCTTCACCACAATGCCGCTGCCGATGAATCTGCTTCGTCGTCGTCGTCGCCGTCTACGCCGCCCTCGCACCAGGGACGGAAACGCCGCGGTGTTCATCATTCCCTCCGGCGGTGCAAAAAAGTGGATAATAATGTTGATGGTGTGGAGACGGCTAAATATGGGGTCACCTCTGTTTGCGGAAGAAGAAGAGAAATGGAGGACACGGTTTCGCTTCATCCATGCTTTGCTACTTACAGAAATCAACCCCAGATTCCCCTTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTGTCAGTGAGGTGCGAAAATCGAATGCATGAACTATTGAAGGAAGAGATTGAAAGCGAATTAGGAGAATCAATGGAGTGGAAGACATTGATGCAACGAAGCTTTGGGCGTATGGATGAGGAAGTCAAGGAGTTCTGCCATCACGACGAGGACGACGGCGACGAGGACGAGGACGAGGACGAGGACGACAGAAATAAAAATACGGTTAGTTGCAGATGCAAACTCCAGACTCCTCGCCAATACGACACCGTTGGATCAACCGCTTTGGTTGCCATCGTAACGCCCCACCAGCTCATCATCTCCAACTGCGGCGATTCCCGCGCCGTGCTTTGCCGGAAAACTAGTGTCCTCCCCCTCTCCTCCGATCATAAGCCAGATCGACCGGACGAATTGTCTCGTATAGAATCGAGAGGCGGGCGAGTGATTTACTGGGACGGGGCGAGAGTGTTGGGAGTTTTAGCGATGTCAAGAGCCATAGGAGATGGTTATCTAAAACCGTACGTGATATCGGAGCCAGAGGTGGTGGAGGTGGATCGGACCGGGGAGGATGAGTTCTTAATCTTGGCCACCGATGGCCTGTGGGACGTCGTTTCCAATGAAACAGCGTGCGACGTCGTACGAACCTGCATGCGGGCTCCGCCGGCTTCCACATCATCGTTGAGCGGCAGTGACAAAACTTGCTCCGACGCCTCCATTGTGCTGACGAAGTTGGCCATGGCGAAGCATAGCTCAGATAACATTAGCGTAGTGGTCATAGATTTGAGAAGAGATGTCACCGAACTCTAA 1290 50.78 MRAHTHIYIYIHIYIYSSTFFHLHIYFYFNSNPIFHRNNMAEICFAGDGEPSPRPKSRPRNSARRTKEFLHHNAAADESASSSSSPSTPPSHQGRKRRGVHHSLRRCKKVDNNVDGVETAKYGVTSVCGRRREMEDTVSLHPCFATYRNQPQIPLHFFGVFDGHGCSHVSVRCENRMHELLKEEIESELGESMEWKTLMQRSFGRMDEEVKEFCHHDEDDGDEDEDEDEDDRNKNTVSCRCKLQTPRQYDTVGSTALVAIVTPHQLIISNCGDSRAVLCRKTSVLPLSSDHKPDRPDELSRIESRGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVISEPEVVEVDRTGEDEFLILATDGLWDVVSNETACDVVRTCMRAPPASTSSLSGSDKTCSDASIVLTKLAMAKHSSDNISVVVIDLRRDVTEL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8872117 8873950 - Cp4.1LG13g11070.1 Cpe13g01100 480298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01100 429 MobiDBLite consensus disorder prediction 76 92 - -
Cpe13g01100 429 Pfam Protein phosphatase 2C 121 415 IPR001932 -
Cpe13g01100 429 ProSiteProfiles PPM-type phosphatase domain profile. 121 422 IPR001932 -
Cpe13g01100 429 Gene3D - 117 427 IPR036457 -
Cpe13g01100 429 PANTHER PROTEIN PHOSPHATASE 2C 3 97 384 - -
Cpe13g01100 429 PANTHER PROTEIN PHOSPHATASE 2C 3 389 425 - -
Cpe13g01100 429 SMART PP2C_4 111 420 IPR001932 -
Cpe13g01100 429 MobiDBLite consensus disorder prediction 214 235 - -
Cpe13g01100 429 CDD PP2Cc 121 422 IPR001932 -
Cpe13g01100 429 MobiDBLite consensus disorder prediction 74 104 - -
Cpe13g01100 429 PANTHER ALPHABET, ISOFORM E-RELATED 389 425 - -
Cpe13g01100 429 PANTHER ALPHABET, ISOFORM E-RELATED 97 384 - -
Cpe13g01100 429 ProSitePatterns PPM-type phosphatase domain signature. 157 165 IPR000222 GO:0043169
Cpe13g01100 429 SUPERFAMILY PP2C-like 120 423 IPR036457 -
Cpe13g01100 429 SMART PP2C_SIG_2 139 422 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01211 Cpe-Chr2:10987820 Cpe13g01100 Cpe-Chr13:8872117 2.95E-121 dispersed
Cpe13g01100 Cpe-Chr13:8872117 Cpe14g00050 Cpe-Chr14:282020 8.07E-81 dispersed
Cpe13g01100 Cpe-Chr13:8872117 Cpe09g00127 Cpe-Chr9:755694 3.38E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01100 K14497 - csv:101220425 437.187