Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01102 ATGGCGAATAGATGGTGGGGTGGAATTGGGAATCCTACAATGATACGGCTTGATTCTTTATCTTCCTTTGATCCTAAAAACCCAGAAGATGAAAACCAAGAACAACAACAACAACAGCAGCAACAACGTGATGCTAAGAATGAAGATCATCATGGAGTCAAACCCAAGAGGCGGCCACGAGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCTATTGTCATCACCAAACACACTCCCAACGCCCTACAAAGCCACGTCTTCGAAATCACTACTGCCACCGACATTGCCCACTCCATTTCCACCTTCGCTCACCGCCGTCACCGTGGAGTCTCCATTCTCAGCGCAACCGGTGTCGTCGCCGATGTCACTCTTCGCCAGCCCGCCGGCGTCATCACCCTCCACGAACGATTCGAGATCTTGTCTCTCTCCGGCGCTTTCCTTCCCACGCCCTCTCCCCACGGGGCTACCGGCTTGACCGTCTATCTCGCGGGCGGCCATGGCCGGGTCGTCGGTGGGCTGGTCGCCGGCCCCCTCATCGCCGCTGGTACCGTCATAGTGGTTGCAGCTTCATTTACGAACGCTATGTATGAAAGATTACCGATGGAGGATGATGATGAAGAGAATGCAAAGGAAGAGAGGCAGTCGGAAGATCATATTAATGCAAATAATTCAGGGGGAGAAGCATCATCATCAGCAGCAGCAGCAGCAGCATCAGCAGCTTCGTTGCCAGTTTATGATTTGATTCCACAAACTCAAATGTCACAAGATATGTTTTGGGCTCCTCTTCCTCCTCCTCCTCCATCTTATTAA 816 51.96 MANRWWGGIGNPTMIRLDSLSSFDPKNPEDENQEQQQQQQQQRDAKNEDHHGVKPKRRPRGRPPGSKNKPKPPIVITKHTPNALQSHVFEITTATDIAHSISTFAHRRHRGVSILSATGVVADVTLRQPAGVITLHERFEILSLSGAFLPTPSPHGATGLTVYLAGGHGRVVGGLVAGPLIAAGTVIVVAASFTNAMYERLPMEDDDEENAKEERQSEDHINANNSGGEASSSAAAAAASAASLPVYDLIPQTQMSQDMFWAPLPPPPPSY 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8883391 8884206 + Cp4.1LG13g10960.1 Cpe13g01102 480300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01102 271 MobiDBLite consensus disorder prediction 1 78 - -
Cpe13g01102 271 ProSiteProfiles PPC domain profile profile. 81 217 IPR005175 -
Cpe13g01102 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 271 IPR014476 GO:0003680
Cpe13g01102 271 MobiDBLite consensus disorder prediction 200 235 - -
Cpe13g01102 271 PIRSF ESCAROLA 8 267 IPR014476 GO:0003680
Cpe13g01102 271 Gene3D - 85 215 - -
Cpe13g01102 271 MobiDBLite consensus disorder prediction 221 235 - -
Cpe13g01102 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 206 - -
Cpe13g01102 271 CDD DUF296 87 193 IPR005175 -
Cpe13g01102 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 271 - -
Cpe13g01102 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 195 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01079 Cpe13g01102 CCT
Cpe01g02551 Cpe13g01102 CCT
Cpe01g00169 Cpe13g01102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01102 Cpe-Chr13:8883391 Cpe03g01502 Cpe-Chr3:11828854 3.56E-59 dispersed
Cpe01g02551 Cpe-Chr1:20834550 Cpe13g01102 Cpe-Chr13:8883391 3.24E-88 wgd
Cpe01g01079 Cpe-Chr1:6366461 Cpe13g01102 Cpe-Chr13:8883391 6.64E-68 wgd
Cpe01g00169 Cpe-Chr1:954469 Cpe13g01102 Cpe-Chr13:8883391 2.13E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01102 - - cmos:111444826 465.307