Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01106 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTGTTCATGATGTTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTGATGGCTACAACCTTAAGGATGTATGCGACCTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGGCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCTACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTGAACCAGCAGGCTTCATCTTCAGAGTCTAATGAGAAGAGACAAGATTCAGCTAATGCAGTTGGCAGTACCAAGACCTCGGAGGATGAACTTACGTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTCTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGCACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCTGGGTGGTCAGAACAGGGACAAGGGGAAACCGATGCGTATTCGGTTTGA 828 46.01 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSANAVGSTKTSEDELTCSVCLEQVNVGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8898256 8902191 + Cp4.1LG13g10990.1 Cpe13g01106 480304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01106 275 MobiDBLite consensus disorder prediction 171 205 - -
Cpe13g01106 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
Cpe13g01106 275 SUPERFAMILY RING/U-box 208 261 - -
Cpe13g01106 275 CDD RING-H2_PA-TM-RING 213 255 - -
Cpe13g01106 275 Pfam Ring finger domain 213 255 IPR001841 -
Cpe13g01106 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 273 - -
Cpe13g01106 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Cpe13g01106 275 PANTHER TARGET OF ERK KINASE MPK-1 1 273 - -
Cpe13g01106 275 MobiDBLite consensus disorder prediction 176 205 - -
Cpe13g01106 275 SMART ring_2 214 254 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02556 Cpe13g01106 CCT
Cpe01g02556 Cpe13g01106 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01575 Cpe-Chr3:12184187 Cpe13g01106 Cpe-Chr13:8898256 1.19E-13 dispersed
Cpe08g00384 Cpe-Chr8:2405944 Cpe13g01106 Cpe-Chr13:8898256 6.98E-14 dispersed
Cpe13g01106 Cpe-Chr13:8898256 Cpe01g01470 Cpe-Chr1:8790792 1.98E-13 dispersed
Cpe01g02556 Cpe-Chr1:20846319 Cpe13g01106 Cpe-Chr13:8898256 4.97E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01106 K16283 - csv:101216306 490.345