Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01120 ATGACCATAAAGAAAGTGACAAGACAAGAACATGATTGCGATAACTTTGTTGCATTAAAATCCTACAACACCGGGGAAGCTTTGCACTTTCTTCCAATCCCTAAACTTCATCTTCTGTTCATACCCCCTTTTTGTGTTCTTTTCACTGCTCCAATGGAGGAAAATTCCAGCCTCGTCGCAGAATCAACTCTCACAAACGCCATGGAAGCAGAGCCTCAGGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTGAACGAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCCAAGGTTTCTCTGATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAAAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTCGCCATTGAAAATATTGCTGGCTACAAGCTTTTGAAAGTGGTCGGTTACATCAAAGAAGAAAGGTACCTAATGGGATTCGCCTACTTTACCACTGCAAATTTCCTTCTCACTTTTGTTGCTGCTGTTCTTTGTGTATGCTTTGCTCCCACCGCCGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTCGGCGCCACCACGTTGATCGTTAAGATTATTGGGAGCATTGGAGCAGTGGCAGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCTTCTTTACTTGGACAGGGCGGTCCGGATAACTATCGAGTCAAATGGACATGGCTACGCTATTTCAACAACGATCGTGATCGTCGGGATCTTATCACATGCGGGGCGTCATCAGGGGTTTGTGCAGCTTTCCGAGCCCCGGTCGGGGGTGTTCTATTTGCCCTAGAAGAGGTGGCTACATGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTTTTCAGCACAGCCATTGTTGTGGTGGTGCTGAGAACTTTCATTGAAATATGCAAGGCAGGTGAGTGTGGGCTGTTTGGAGAAGGAGGGCTTATTATGTTTGATGTCAGTGGTGTTTCTGTTAGCTACCATATCATGGATATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTGCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAGGGAAAAATGCACAAACTGTTACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGGCCAATGCACCCCCTGCAACCCTTCTTTTCCAGGTTCCGCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCTAAAGGCCATTACAACGACCTCGCCACCCTTCTCCTCGCCACCAACGACGATGCCGTTCGAAACATCTTCTCCACCAACACTTCCACCGAGTACCAGCCCCTTTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTCTTAGGGCTTATCACTTTCGGCATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATTTTGATGGGCTCTGGCTATGGCCGTCTCATCGGCCTCCTCATGCGGCCCTACTCCGATCTCGATCAGGGACTTTTGGCTGTTCTCGGTGCTGCCTCCTTAATGGCCGGCTCCATGCGGATGACCGTTTCCCTCTGCGTTATATTCCTCGAGCTCACCAACAATCTCCTTCTACTTCCGATTACGATGATTGTCCTTCTGATTGGAAAAACCGTCGGGGACTGTTTTAACCCTAGTATTTATGACATCATCCTACATCTGAAGGGGCTTCCGTTCTTGGACGCGAATCCGGAGACGTGGATGAGGAACATCACGGTGGGCGAACTGGCTGACGCAAAGCCGGCGGTGGTGACGCTGCGGGGATTGGAGAAAGTGTCCCGCATTGTGGAGGTTCTTAAGAACACGACGCATAACGGGTTCCCTGTTGTGGACTCGGACGCAGTGGTGCCGCCAGTGGGGATGGCAGTGGGGGCGACGGAGCTGCACGGGCTAGTGCTGAGAGCGCATTTGCTGCAGGTGCTGAAAAAGAAATGGTTCTTGAGAGAGAAGAGAAGAACAGAGGAATGGGAGGTGAGGGAGAAGTTTACATGGGTGGAATTGGCGGAGAGGGAAGGGAAGATTGAGGAGCTTGCAGTGAAGAAGGAGGAGATGGATATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAGAGCATGTCTGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTGGGGCTCCGCCATTTGCTCATCGTGCCCAAGTATGAAGCTGCTGGGGCTCCGCCTGTAATTGGGATTTTGACGAGGCAGGATTTGAGGCCGTACAACATTCTGAGTGCGTTCCCTCATCTTGCCAAGATCAAAGGCAACGAAAAACGGAACTGA 2523 49.62 MTIKKVTRQEHDCDNFVALKSYNTGEALHFLPIPKLHLLFIPPFCVLFTAPMEENSSLVAESTLTNAMEAEPQEEERDPESNPLNEPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGKMHKLLLSLGVSLFTSICQYSLPYLGQCTPCNPSFPGSACPTNGRSGNFKQFNCPKGHYNDLATLLLATNDDAVRNIFSTNTSTEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYSDLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIGKTVGDCFNPSIYDIILHLKGLPFLDANPETWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDSDAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLREKRRTEEWEVREKFTWVELAEREGKIEELAVKKEEMDMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGAPPVIGILTRQDLRPYNILSAFPHLAKIKGNEKRN 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8983128 8986644 - Cp4.1LG13g11250.1 Cpe13g01120 480318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01120 840 Gene3D - 641 824 IPR046342 -
Cpe13g01120 840 ProSiteProfiles CBS domain profile. 767 832 IPR000644 -
Cpe13g01120 840 PRINTS Chloride channel signature 211 228 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 242 261 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 306 325 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 532 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 564 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 582 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 PRINTS Chloride channel signature 620 634 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 MobiDBLite consensus disorder prediction 67 87 - -
Cpe13g01120 840 SUPERFAMILY CBS-domain pair 637 819 IPR046342 -
Cpe13g01120 840 Pfam Voltage gated chloride channel 199 613 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe13g01120 840 CDD ClC_6_like 111 633 - -
Cpe13g01120 840 PRINTS Plant CLC chloride channel signature 116 124 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe13g01120 840 PRINTS Plant CLC chloride channel signature 327 335 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe13g01120 840 PRINTS Plant CLC chloride channel signature 341 351 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe13g01120 840 PRINTS Plant CLC chloride channel signature 359 366 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe13g01120 840 PRINTS Plant CLC chloride channel signature 484 500 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cpe13g01120 840 Gene3D Clc chloride channel 133 635 - -
Cpe13g01120 840 SMART cbs_1 770 823 IPR000644 -
Cpe13g01120 840 SMART cbs_1 655 715 IPR000644 -
Cpe13g01120 840 PANTHER CHLORIDE CHANNEL PROTEIN 52 835 - -
Cpe13g01120 840 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 52 835 - -
Cpe13g01120 840 Pfam CBS domain 769 819 IPR000644 -
Cpe13g01120 840 SUPERFAMILY Clc chloride channel 120 635 IPR014743 -
Cpe13g01120 840 CDD CBS_pair_voltage-gated_CLC_euk_bac 653 821 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02566 Cpe-Chr1:20894790 Cpe13g01120 Cpe-Chr13:8983128 8.21E-34 dispersed
Cpe12g00206 Cpe-Chr12:1342957 Cpe13g01120 Cpe-Chr13:8983128 0 dispersed
Cpe13g01120 Cpe-Chr13:8983128 Cpe14g00660 Cpe-Chr14:4347565 0 dispersed
Cpe13g01120 Cpe-Chr13:8983128 Cpe01g00804 Cpe-Chr1:4797320 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01120 K05016 - csv:101210008 1446.41