Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01140 ATGGAATCCTTTCTGTTCTCTCTTTCTCGCCTTTTTTCACCTTTTCTGCTCCTGATTTTGATTTTGACCACGTCTCGTGCTTTCCCTGATTATGGTGAATGGTTCTTGAACTGCAGCAATTCGAAGGGATGCATGAGTGTTCCCGATAATGAACCTCCTCTCTGGTCAAATATTGGAGAAGAAACTTGTGGTGGTAATCCCCAGACAATGAACGTCAACTGCGATGGTGGAGGCCGTGAAATCATAGAAATTGAGGGAAGAAGTTACCAACTCCTGGGATATAGTATAAAGGATCAAATTCTTATAATAGCTGAAATCGACCATTCTGCTTGGTTTTGTTCCAACCATGCTCCCTCAATTTCCATCTATGCGATGATTCATGTATCTTATCACTGCGGGCATCCTCATACACCAGACAAACCTACTTGTCCGGGATCTGAGTTTATCCACATCCCATTAGATAAGAGGACTAGTTTTGATGGATTTTGTTCTTTGAGTACTGAAGTGAAAATTTCACCATCGTTGTTGAACGAAAATCACAATGATTTGAAAAGGGTAGCGCAGCATATCATAGAAGAGTTAAAGGCAACGCGGAAGGTGAAATCCAATGCAGAATGTGGGAATTGCAGTGTTCCTGGCGCTGTTTACAGTTATGACTTGCAATTGCATCAACCAAAATGCTGCTGTAAAACTTCCCCTAAAGTGTTTGAATTCTGTCCTTCCCCACCGGCTGGATCGCCACAAAACGATGATGCGCCCAAAACAGCAGCACCTCCTCCCGCAACAGTTCTAATCCAACCCCCGACTCTTTTATGTGATGGCGAGGAGGAGAAATATAGAAACTGCAACTCATCACTGAAGTGCCTCACATATCCAAATCTCGGCTATCCTTTCTGGGGTTTGAATCGACCTGATTACTGTGGCCATCCAAGTTTTGAGTTGAGTTGCAGAGAAGAAGCTCTAGAAATTGCAATCAACTCCATCGCCTATCGGATTCTCGAGATCAATACCAACACACACACTCTGAGGGTAGTTAGAAAAGATTACTGGAACAATATCTGTCCACAGTCCTTGAAGAACACCACGTTTGACTCAAACCTCTTCTACTACAGCTCAAACACTCAGCCCCTAAAGCTACTTTATGACTGCGCATCCTTGCCCGTTGGTTTGCCTGGCCAGTTTCGTTGCAACATAAACAGTACAAATTATGTTAATCTCATCGTAACCCAGAATTCCGAGGCTAGGAATAGCTCAAACACGATGAAGTGCAACCATAGCGTTGATGTTGCAATCTCTAGATCAATGATGCAAAGTCTACAGAGCAATCCAAGTGAGCTAAACCTAAAAGAAGCTCTTGAAACTGGATTTGAGTTGCAGTGGAGGATAGACAATAGAGTGTGTTATGAGTGTCATGAATCAGGCGGGCAGTGTGGTTCAGACCCAAGTTTGGGTGAATTCACTTGTTATTGTTTGGATGGAGCTTTCAAAACCACTTGTGGATCAACGCCTTCAGCAGAGGCAACGAAGACGAAGAAGACAGCAACAGAAAAAGGCATTATAATTGGTGCTTCGGTTGGAGGAGCCTTTTTGGTGGCAACGATTTTAGGGTTTTGCATCTTTTTTTGTTTGGGGAAGAAGAAGAAGAAGCACCCAGTTGGGTATGTCAGCAAGGAAGCTGCCCTTTCTCCTCCTGTTTCTGATCCTCTTTCCGACAAAGATATGCCTCCCGCTCCTCTTCTGAACTCCTTCCAGACTCACAGCATTCCTTCTTATCCCTCTTCCAAATCTGACCTTGAGAGGCCTTCCCCCAACTCTGATATTCAAGTATTCAGCTATGCTGAACTCGAAAAAGCTACCCAGAATTTCAACCGTTCTCGAGAGCTTGGCGATGGCGGATTTGGCACTGTTTATTACGGGAAGCTTGATGATGGGCGTGAAGTTGCTGTGAAGCGTCTATATGAACATAACTGCAAACGTGTGGAGCAGTTCATGAATGAAGTGAATATCCTTGCTGATTTACAACACAAGAACCTTGTCAAGCTCTATGGCTGCACCTCCAAATTTAGCCAAGGCCTTCTCCTTGTCTACGAATACATTCCCAATGGAACTGTCGCCGACCATCTCCACGGATCACGGGTGAAGTTTGGTCTACTCAGTTGGCCGATTCGGTTGCGAATCGCCATCGAAACAGCGAATGCACTCATATATCTCCATCGCAAAGACATCATACATCGAGATGTCAAAACCAATAACATTCTCCTTGACAGCACCTGCACTATCAAAGTGGCTGATTTTGGCCTTTCAAGGCTGTTCCCTACTGATGTAACTCATGTTTCCACTGCCCCACAAGGCACGCCTGGTTATGTTGATCCTGAGTACTACCAATGTTATCAACTTACTACTAAGAGCGACGTATACAGCTTTGGAGTAGTTTTGATTGAGCTTATATCGTCGCTAAGAGCTGTCGACACCGATAGGAAACGACAGGATATCAACTTGAGCAATATGGCAGTGAGTAAAATACAAAATCGGGCATTGAATGAGTTGATCGATCCGAAGCTCGGGTTCGACAAGAATCCTGAAGTTATGAGGGCGACAACATCAGTAGCGGAGTTGGCTTTTCGTTGCCTTCAACAAGAAAGAGACATGAGGCCTTCCATGGAAGAAGTGGTGGAAGTACTAAGGGAGATTGAGAATGACAAATCCAGTTCTGAGATGTCTAAAGTTGTCGATACAGGAGTCGTTGAAGACGACATCGAGATCACGAAGAGAACACCACCCGCCTTTTCGCCGAATTCTGTCATAGATGATAACTGGGTTAGCAGCTCTACCATTACAAATTCCTTGTGA 2850 44.39 MESFLFSLSRLFSPFLLLILILTTSRAFPDYGEWFLNCSNSKGCMSVPDNEPPLWSNIGEETCGGNPQTMNVNCDGGGREIIEIEGRSYQLLGYSIKDQILIIAEIDHSAWFCSNHAPSISIYAMIHVSYHCGHPHTPDKPTCPGSEFIHIPLDKRTSFDGFCSLSTEVKISPSLLNENHNDLKRVAQHIIEELKATRKVKSNAECGNCSVPGAVYSYDLQLHQPKCCCKTSPKVFEFCPSPPAGSPQNDDAPKTAAPPPATVLIQPPTLLCDGEEEKYRNCNSSLKCLTYPNLGYPFWGLNRPDYCGHPSFELSCREEALEIAINSIAYRILEINTNTHTLRVVRKDYWNNICPQSLKNTTFDSNLFYYSSNTQPLKLLYDCASLPVGLPGQFRCNINSTNYVNLIVTQNSEARNSSNTMKCNHSVDVAISRSMMQSLQSNPSELNLKEALETGFELQWRIDNRVCYECHESGGQCGSDPSLGEFTCYCLDGAFKTTCGSTPSAEATKTKKTATEKGIIIGASVGGAFLVATILGFCIFFCLGKKKKKHPVGYVSKEAALSPPVSDPLSDKDMPPAPLLNSFQTHSIPSYPSSKSDLERPSPNSDIQVFSYAELEKATQNFNRSRELGDGGFGTVYYGKLDDGREVAVKRLYEHNCKRVEQFMNEVNILADLQHKNLVKLYGCTSKFSQGLLLVYEYIPNGTVADHLHGSRVKFGLLSWPIRLRIAIETANALIYLHRKDIIHRDVKTNNILLDSTCTIKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSLRAVDTDRKRQDINLSNMAVSKIQNRALNELIDPKLGFDKNPEVMRATTSVAELAFRCLQQERDMRPSMEEVVEVLREIENDKSSSEMSKVVDTGVVEDDIEITKRTPPAFSPNSVIDDNWVSSSTITNSL 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9070975 9076876 - Cp4.1LG13g11460.1 Cpe13g01140 480338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01140 949 Pfam Protein tyrosine and serine/threonine kinase 625 894 IPR001245 GO:0004672|GO:0006468
Cpe13g01140 949 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 269 938 IPR044652 -
Cpe13g01140 949 Gene3D Phosphorylase Kinase; domain 1 594 698 - -
Cpe13g01140 949 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Cpe13g01140 949 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 125 IPR044652 -
Cpe13g01140 949 SMART serkin_6 622 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g01140 949 ProSiteProfiles Protein kinase domain profile. 622 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g01140 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Cpe13g01140 949 Pfam Wall-associated receptor kinase C-terminal 405 492 IPR032872 -
Cpe13g01140 949 Gene3D Transferase(Phosphotransferase) domain 1 699 921 - -
Cpe13g01140 949 SUPERFAMILY Protein kinase-like (PK-like) 603 900 IPR011009 -
Cpe13g01140 949 PANTHER - 11 125 - -
Cpe13g01140 949 PANTHER - 269 938 - -
Cpe13g01140 949 CDD STKc_IRAK 628 897 - -
Cpe13g01140 949 Pfam Wall-associated receptor kinase galacturonan-binding 282 346 IPR025287 GO:0030247
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00991 Cpe13g01140 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01430 Cpe-Chr1:8585194 Cpe13g01140 Cpe-Chr13:9070975 1.49E-88 dispersed
Cpe02g01414 Cpe-Chr2:12308346 Cpe13g01140 Cpe-Chr13:9070975 5.81E-10 dispersed
Cpe03g00991 Cpe-Chr3:8063917 Cpe13g01140 Cpe-Chr13:9070975 2.06E-37 dispersed
Cpe07g00450 Cpe-Chr7:2878155 Cpe13g01140 Cpe-Chr13:9070975 2.53E-89 dispersed
Cpe09g00139 Cpe-Chr9:828120 Cpe13g01140 Cpe-Chr13:9070975 7.52E-89 dispersed
Cpe09g00318 Cpe-Chr9:1891216 Cpe13g01140 Cpe-Chr13:9070975 1.31E-152 dispersed
Cpe13g01098 Cpe-Chr13:8857398 Cpe13g01140 Cpe-Chr13:9070975 4.90E-78 dispersed
Cpe13g01140 Cpe-Chr13:9070975 Cpe18g00696 Cpe-Chr18:6922562 9.41E-123 dispersed
Cpe13g01140 Cpe-Chr13:9070975 Cpe20g00131 Cpe-Chr20:727800 1.62E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62813 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01140 - - csv:101215984 1046.96