Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g01152 ATGGATGGTTTGGTCATCGAGATCAACCTCGGGACTGTAGATTCATGGCGGACCGCCGGAAATGGCGACGTCGCCGGAAAGACAAGCGCCGCATCGTTTTCACTCCTTGTTTCATCATCTGCTCACTATTTCAGACCTTCCTCTGCTCATTTTCAACTGTTCTTACGCTTACACTCAGTCCATTTTACTCTTATGATTGGTCAGCAGAGTATGAGCTCTTCATCAGCTCAGCTCTATGCATCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGTAATGCCTTCGGTACTCGACTCGATACCAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCTGAGTTCGTTCCTTTCGAATCGATGGATCATCACGAGAGCAGTCAAGAAACGAACAAGCCAATCGATGATAAGGTACAACGACGTTTAACACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTACAGCAGTTAGAAACTAGCCCGAGCTGCTTAGCAGATACCAGCCACTTGGGATTCAGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGTTAGAATACAATCACTGGGTTGAAAAGCAAGAGAGACAGATCACTGAACTCAGAAAGGCATTGCAGCAAGTTCATATAATAACTGATACAGAACTCAAAATTTTAGTGGAAAGCAGCTTAAACCATTACCATAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTATGGAGATCATCAGCAGAGCGTTTTTTCCTGTGGATTGGAGGATTTCGGCCATCGGAGCTGCTAAACGTGCTGACGCCATACTTTGAGGCATTAAATGAACAACAACAGAGCGCTATCCACAATTTGCAGCAGTCGTCTCGGCAAGCTGAAGACGCGCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTGAGATGGGTGATGGAATGGAGAAAGCAGAAGCATTGGAGAGCTTGGTAAGGCAGGCAGACCATCTGAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAAGTACCAAACAAGCGGCGCAAGGGTTGGTCGCTTTAGGCGAGTACTTCCACCGTCTCCGTATTCTGAGCTCCCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG 1230 46.1 MDGLVIEINLGTVDSWRTAGNGDVAGKTSAASFSLLVSSSAHYFRPSSAHFQLFLRLHSVHFTLMIGQQSMSSSSAQLYASRMGIYEPFHQINSWGNAFGTRLDTSISPIIKVDDCVDNKPEFVPFESMDHHESSQETNKPIDDKVQRRLTQNREAARKSRMRKKVYVQQLETSPSCLADTSHLGFSRLVNPGIAAFELEYNHWVEKQERQITELRKALQQVHIITDTELKILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLTPYFEALNEQQQSAIHNLQQSSRQAEDALSQGMEKLHQNLSLSIASDPIGSYISEMGDGMEKAEALESLVRQADHLRQQTLKRMSHILSTKQAAQGLVALGEYFHRLRILSSLWATRPREPA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9134720 9138022 + Cp4.1LG13g11550.1 Cpe13g01152 480350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g01152 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 148 163 IPR004827 GO:0003700|GO:0006355
Cpe13g01152 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 143 172 IPR004827 GO:0003700|GO:0006355
Cpe13g01152 409 Coils Coil 295 315 - -
Cpe13g01152 409 ProSiteProfiles DOG1 domain profile. 194 404 IPR025422 GO:0006351|GO:0043565
Cpe13g01152 409 Pfam bZIP transcription factor 144 173 IPR004827 GO:0003700|GO:0006355
Cpe13g01152 409 SMART brlzneu 141 221 IPR004827 GO:0003700|GO:0006355
Cpe13g01152 409 Pfam Seed dormancy control 211 288 IPR025422 GO:0006351|GO:0043565
Cpe13g01152 409 Coils Coil 205 225 - -
Cpe13g01152 409 PANTHER TRANSCRIPTION FACTOR TGA7 71 408 - -
Cpe13g01152 409 Gene3D - 144 226 - -
Cpe13g01152 409 PANTHER TRANSCRIPTION FACTOR TGA9 71 408 - -
Cpe13g01152 409 SUPERFAMILY Leucine zipper domain 145 178 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01152 Cpe-Chr13:9134720 Cpe14g00573 Cpe-Chr14:3635226 1.06E-109 dispersed
Cpe20g00466 Cpe-Chr20:2700081 Cpe13g01152 Cpe-Chr13:9134720 2.95E-08 dispersed
Cpe01g02608 Cpe-Chr1:21130185 Cpe13g01152 Cpe-Chr13:9134720 4.06E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50467 PF14144 DOG1 4.00E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g01152 K14431 - csv:101217648 569.696