Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00004 ATGCTTTCTGCAGCTGTTTTTGGCCACCACCTCACCTGGATCAACTCTGCTACACTGCCGGTTATCAATGTCAGTTCGTTCAGATTCCAGAATCGAGCTGTACCCGTACACTTCTCCCTCTCCGCAAACCTTTCCGTCGGCAATGACATTAGAGGTGACAGAAACAGACATTCAATCCACCTTGATAGCCTCAGAGCGCTGGAATGGGATAAACTCTGTGATTCCGTTGCTTCCTTCGCCCGCACTTCACTGGGCCGTCAAGCTATCAAGGCCCAACTTTGGTCTTTGAACCGGACCTATGAAGAAAGCTTGAGACTTTTGGATGAGACTAATGCGGCAGTAGAAATGCACAAGCATGGTGGCTGCAGCTTGGATTTAAGTGGCGTCGACCTTCGGCTGGTGAAATCTGCAATGGAACATGCTCAAAGGAGTCTTCCAATGGATGGAAATGAAGCAGTTGCTATTGCAGCTCTTCTACAGTTTGCTGATATGTTGCAATTTAATTTGAAAACTGCAATCAAAGAAGATGCGGATTGGTCTACACGTTTTATGCCCCTAACAAAAGTGATAATGGGAATGGTTGTAAATCAATCATTGATTAAACTGATACTGAATGTTGTAGATGAAGATGGCTCAGTCAAAGATTCTGCGCTATGTCAGTTAATGGACAGCCTAGTTAGGAACGCAAAGAGTGGAACATCCTTTATGGAAGTAGGAATTGTTGATGGAAGGTGGTGTATAAAGTCAGAGGGTGTTCAATTGATGGATGTTAAGGGTCTCCTGTTGTCCAGTGCTGCAGGGATTGGTACCATCCTAGAGCCACTCTCTGCTGTTCCTTTAAATGATGAGTTGCAACAAGCAAGGGCAGCAGTGGCAAAAGCTGAGGAAGATGTTCTCTTTATGCTAACTGAAAAAGTGAAAATGGATTTTGAAGATATTAATAAACTCATTCGCTGTATAATTGAATTGGATGTGGTCAATGCGCGAGCATCTTATGGTCTTTCATTTGGGGGGGCATGTCCCAATTTAATCTTACCAGGTGGGTGCAACTCTTCTATTGCTAATGTCTACTTATCAGGGGACCAAATATCTGAGGCATCACACCCAAAGGAGAACAAATGGGTCCTCTATTTACCCAATGCCCATCACCCTTTACTAACTCAGCAATATAGAGAAAGTTTGGAAAATGCCAAGAGGGATGTTCGAAATGCTGTTACTGAGATAGGGAGAAAACTTCCTGGGGGTAATATGTCATGGAAAGAAAAAGAAGTTGCCGATATTTCATTATTAAAAATGAAGGTTGAACAATTGGAGCAAGCTCGTCCTGTTTCGGTTGATTTTGCAATATCTCACAGAATTCGAGTTTTAGTTATAACTGGCCCTAATACTGGGGGCAAGACAGTTTGTTTGAAGACCATTGGATTGGCAGCCATGATGGCGAAATCAGGGCTTCATGTTTTAGCTTCAGAGTCTGTACAAATCCCTTGGTTTGATTCTGTTCTTGCTGATATCGGTGATGAACAGTCCCTAACCCAATCTTTGTCCACCTTTTCTGGCCATTTGAGGAAAATAAGTGAGATACAGTCAGTTTCAACTAGTCAGTCGTTGGTACTACTGGATGAAGTTGGTGCAGGGACCAATCCTCTGGAGGGAGCCGCACTTGGGATGTCACTGCTGGAATCTTTTGCTAAATGTGGAGCTGCATTGACAATCGCAACTACACATCATGGAGAACTTAAAACCCTAAAATATAGCAATGAGGTCTTTGAAAACGCGTGTATGGAATTTGATGAGGTGAACCTAAAGCCAACCTACAAGATTCTCTGGGGAGTACCAGATTCTGCAATTCTTTTTTCTCTCAGCAAACCTAATACCAAAGGAGGCGAAATTATGTTTGCAGGACGTTCAAATGCTATTAATATAGCTGAAAGGTTAGGGGTGCCTAGTTCTGTTGTAGATGATGCTCGGGAACATTATGGTGCGGCAAGTGCACAGATAGATGAGGTCATACTCGATATGGAATGTACAAAGAAAAAGTATGGGGACCTCTTACAAGAAGCTCAAAATAATTTGACGGACTCGAAGAATCTTTACGAAAAGTTGCTGCTTGCTAGAAGAAACATTATTGAACATGGCAGACAACAGAGGCTTAGAAAAGTGCAAGAGGTATCCCGGGCAGCAGCAACGGCTCGTTCTAACCTTCACAGAAAAGTACGAGAACTGCGTGCGTCCGCAATTGAATTCTCCCCGCCCTCTGCCATTGATAGTAGGCAACGTGCAGTAAAAAACCCTAATACGCTAGATACAACAGGACAAAAGAATTCGATGGCATTGGATACGCATCTCTCTTCAACCGGCGACATCAATCAGCCACGATCAGAGGAGCCTGAGTTTCCCACTGTTGGTGATACTGTGTACGTTTCTTCCTTTGGAAAGAAAGCGACAGTTTTAGGTGTAGAGCCATCAAAAGACGAAGTAACCGTTCGAGTTGGTAGCATAAAGTTGAAGCTGAAGTTCACCGACATAATGAGATAA 2535 43.39 MLSAAVFGHHLTWINSATLPVINVSSFRFQNRAVPVHFSLSANLSVGNDIRGDRNRHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIKAQLWSLNRTYEESLRLLDETNAAVEMHKHGGCSLDLSGVDLRLVKSAMEHAQRSLPMDGNEAVAIAALLQFADMLQFNLKTAIKEDADWSTRFMPLTKVIMGMVVNQSLIKLILNVVDEDGSVKDSALCQLMDSLVRNAKSGTSFMEVGIVDGRWCIKSEGVQLMDVKGLLLSSAAGIGTILEPLSAVPLNDELQQARAAVAKAEEDVLFMLTEKVKMDFEDINKLIRCIIELDVVNARASYGLSFGGACPNLILPGGCNSSIANVYLSGDQISEASHPKENKWVLYLPNAHHPLLTQQYRESLENAKRDVRNAVTEIGRKLPGGNMSWKEKEVADISLLKMKVEQLEQARPVSVDFAISHRIRVLVITGPNTGGKTVCLKTIGLAAMMAKSGLHVLASESVQIPWFDSVLADIGDEQSLTQSLSTFSGHLRKISEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKCGAALTIATTHHGELKTLKYSNEVFENACMEFDEVNLKPTYKILWGVPDSAILFSLSKPNTKGGEIMFAGRSNAINIAERLGVPSSVVDDAREHYGAASAQIDEVILDMECTKKKYGDLLQEAQNNLTDSKNLYEKLLLARRNIIEHGRQQRLRKVQEVSRAAATARSNLHRKVRELRASAIEFSPPSAIDSRQRAVKNPNTLDTTGQKNSMALDTHLSSTGDINQPRSEEPEFPTVGDTVYVSSFGKKATVLGVEPSKDEVTVRVGSIKLKLKFTDIMR 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23950 48092 - Cp4.1LG14g06990.1 Cpe14g00004 480388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00004 844 Coils Coil 387 407 - -
Cpe14g00004 844 Coils Coil 277 304 - -
Cpe14g00004 844 ProSitePatterns DNA mismatch repair proteins mutS family signature. 535 551 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cpe14g00004 844 Gene3D - 420 745 IPR027417 -
Cpe14g00004 844 Coils Coil 684 704 - -
Cpe14g00004 844 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 43 841 - -
Cpe14g00004 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 660 IPR027417 -
Cpe14g00004 844 SMART mutATP5 453 660 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cpe14g00004 844 Coils Coil 420 440 - -
Cpe14g00004 844 PIRSF MutS_YshD 629 844 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Cpe14g00004 844 PIRSF MutS_YshD 57 622 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Cpe14g00004 844 Pfam MutS2 and Smr-associated SH3 domain 801 842 IPR046893 -
Cpe14g00004 844 MobiDBLite consensus disorder prediction 782 801 - -
Cpe14g00004 844 Pfam MutS domain V 456 658 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cpe14g00004 844 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 43 841 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00004 - - - bhj:120082749 1327.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00845 Cpe-Chr9:7789890 Cpe14g00004 Cpe-Chr14:23950 1.18E-79 dispersed
Cpe14g00004 Cpe-Chr14:23950 Cpe18g00743 Cpe-Chr18:7209797 4.44E-16 dispersed
Cpe14g00004 Cpe-Chr14:23950 Cpe14g00111 Cpe-Chr14:602249 3.92E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g938 . . . . . . . . . . . . . . . . Cpe14g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00003 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002296 1 19 1 1 1 1 1 2 2 1 1 1 1 0 3 1 2 2 1 2 1 1 1 3 4 3 1 1 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00004 Cpe_Chr14 FPKM 138.717667 148.642792 1.137478 1.116972 1.436599 1.07822 1.189274 0.195105 0.217897 0.286965