Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00012 ATGGGCGAAGAAGCTGTTCAGATGCAGCAGCAGCAGCAGGAAGAAGCAAAGGTAGAGGAGATGAAATTGGAGGAAGCCAAGCCCTGTCCTTGTCCTCCGATCGTATTGTTGGTGGATCTTCATTGCAGTGGGTGTGCAAAGAAAATAGAAAAGTGTATTATGAGAATCAGAGGAGTGGAAGGGGTGAGCATTGACATGGCGAAAAATGAAGTAACCATAAAAGGAATAGTAGACCCAGATGCGGTTTGCGCCAAAATCACCACCAAGACCAAGAGGGTAGCCAAAGTGTTGTCCCCATCGCCGCCGCTGCCTGAGGGTGAACCCAGCCCCCACCTAATTGTTAACTCCCAGGTGGTGGAATTGAACGTCAACATGCACTGCGACGCCTGTGCTCACCAGCTCAAGAAGAAGATACTCAAAATGAGAGGAGTCCAAACAGCATCCACAGAATTGAGCACAGGCAAGGTAGTGGTAACAGGAACCATGGATGGGGATAAGCTCGTGGACTACGTGTACAGACGCACCAAAAAACAAGCCAGAATAGTTCCACAGCCCCAACCCACAGCCACGCCACCAGAAGAAGAGCCATTAAAACCCGAAGAAAGCAAAGAAGAGCAGGCGGCACCACCACCACCACCACCACCAGAGGAGATTAAGACAGAAGACGCTGCTGCACCCCAAGCCCAAGGAACAGACACGAACAACAATAACAAGGAAGAGGTACAACCAAAAGCGGCGGAAGAGGGTGGGGGGCCGGTGGTGGAAGCGACGGCCGAGACAAAACCAAATGTGGAGGTGGAGGAAGCGAAGGCGGCGGAGGCTGGAGATGAGATGATGGGTGAGGATGATCATGAAAGCATGAAGAGGATGATGTACCAATATTATCAATATCAGCCACTTTACGTTATGGAACGAATTCCACCGCCTCAGCTGTTCAGCGATGAGAATCCCAATGCGTGTTGCGTTCTATAA 972 50.72 MGEEAVQMQQQQQEEAKVEEMKLEEAKPCPCPPIVLLVDLHCSGCAKKIEKCIMRIRGVEGVSIDMAKNEVTIKGIVDPDAVCAKITTKTKRVAKVLSPSPPLPEGEPSPHLIVNSQVVELNVNMHCDACAHQLKKKILKMRGVQTASTELSTGKVVVTGTMDGDKLVDYVYRRTKKQARIVPQPQPTATPPEEEPLKPEESKEEQAAPPPPPPPEEIKTEDAAAPQAQGTDTNNNNKEEVQPKAAEEGGGPVVEATAETKPNVEVEEAKAAEAGDEMMGEDDHESMKRMMYQYYQYQPLYVMERIPPPQLFSDENPNACCVL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 75150 76995 + Cp4.1LG14g07080.1 Cpe14g00012 480396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00012 323 Gene3D - 115 181 - -
Cpe14g00012 323 Gene3D - 33 94 - -
Cpe14g00012 323 MobiDBLite consensus disorder prediction 226 240 - -
Cpe14g00012 323 CDD HMA 120 160 IPR006121 GO:0046872
Cpe14g00012 323 Pfam Heavy-metal-associated domain 37 79 IPR006121 GO:0046872
Cpe14g00012 323 Pfam Heavy-metal-associated domain 122 164 IPR006121 GO:0046872
Cpe14g00012 323 SUPERFAMILY HMA, heavy metal-associated domain 117 173 IPR036163 GO:0046872
Cpe14g00012 323 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 3 322 IPR044258 GO:0046872
Cpe14g00012 323 SUPERFAMILY HMA, heavy metal-associated domain 34 89 IPR036163 GO:0046872
Cpe14g00012 323 MobiDBLite consensus disorder prediction 261 283 - -
Cpe14g00012 323 ProSiteProfiles Heavy-metal-associated domain profile. 32 86 IPR006121 GO:0046872
Cpe14g00012 323 MobiDBLite consensus disorder prediction 178 283 - -
Cpe14g00012 323 Coils Coil 6 26 - -
Cpe14g00012 323 CDD HMA 40 86 IPR006121 GO:0046872
Cpe14g00012 323 ProSiteProfiles Heavy-metal-associated domain profile. 124 158 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00012 - - - cmos:111430912 507.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00006 Cpe14g00012 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00012 Cpe-Chr14:75150 Cpe18g00916 Cpe-Chr18:8158347 2.63E-36 dispersed
Cpe14g00012 Cpe-Chr14:75150 Cpe09g00006 Cpe-Chr9:27301 6.64E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00012 Cpe_Chr14 FPKM 2.361502 0.163852 0.0 0.771531 2.684827 1.266022 2.700905 0.0 0.0 0.0