Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00018 ATGGCGGTTGCTGAGAATGTTGGACCCAAAATCGGCTCTCCAAGTCAAAGTTTTGAAAACACCATGGTTTCCTCCGATTCTAATGATCCTAAGGATGTTCAAAATCAGAAGCCTAAGAACGATTCTACGGTTTCGATTAATGCAGAACCCGACTTTCATCCCAACGGAATCGATCAGAATACACAGAAGAAGGCGGCACACCTCCAGGAGAGAGCGGCTGCCGCAACTTCTTTTGCACTTCCTTCGCCCAATTTCAAGGCCCAAATGGGTCAGATGCAGAACGGGTTTGAAACTAATGCCCAGTCGCTAATGGTGAAGTCTGCTGCTGGTTATGGGATGAATCAGAGGCCTAATGGAGTGATAAACGGAGCCGATGGAGGGGAAAACTTTAAGAGGGATATGAGGGATCTGGAGGACTTACTATCCAAATTGAATCCCATGGCTGAGGAATTTGTTCCTCCTTCGCTAGCCAAAAATTTTTCTGGTTACTTCGGCGGTGCTGCCCTTGGGTATACGAACGACTTTCTATTGCAAGCTAATTCTCTCAACAACGAAGGGAATAATAATCGAAGGAAGAAGAATGGTTTTAGTCAAGGAAGACGGAAGACGAATAATAAGATGAATGCAGTGAAGCGAGATGAGATGACCCGAAGGACAGTGTATGTATCAGACATTGATCAGCAGGTGACTGAAGAGCTACTTGCTACCGTCTTTGCTAACTGTGGAGAGGTTGTTGACTGTCGTATCTGTGGTGATCCCAACTCCATTCTTCATTTTGCCTTCATTGAGTTCACTGATGAAGAGGGTGCAAGGGCTTCCTTGAATCTTTCAGGGACAGTGCTTGGTTTTTATCCAGTCAGAGTGCTGCCCTCAAAAACTGCAATAGCACCTGTCAATCCTGAATTTTTACCCAGGTCGGACGACGAACGTGAGATGTGCTCAAGAACTATCTATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGAGGTCAAGCTGTTCTTTGAATCACTATGTGGAGAGGTTCAGCGCCTTAGGCTACTTGGAGATTATCATCATTCCACTCGTATAGCATTTGTTGAGTTTACAATGGCTGAGAGTGCAATTGCTGCTCTTAATTGCAGTGGAGTGGTGTTGGGTTCCCTGCCAATAAGGGTGAGCCCATCAAAGACCCCAGTTCGTCCTCGCTCTCCTCGTGCCCAGCTGAACTGA 1212 45.87 MAVAENVGPKIGSPSQSFENTMVSSDSNDPKDVQNQKPKNDSTVSINAEPDFHPNGIDQNTQKKAAHLQERAAAATSFALPSPNFKAQMGQMQNGFETNAQSLMVKSAAGYGMNQRPNGVINGADGGENFKRDMRDLEDLLSKLNPMAEEFVPPSLAKNFSGYFGGAALGYTNDFLLQANSLNNEGNNNRRKKNGFSQGRRKTNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFANCGEVVDCRICGDPNSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPEFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRAQLN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 110863 114761 + Cp4.1LG14g07120.1 Cpe14g00018 480402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00018 403 MobiDBLite consensus disorder prediction 182 206 - -
Cpe14g00018 403 SUPERFAMILY RNA-binding domain, RBD 305 397 IPR035979 GO:0003676
Cpe14g00018 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 293 IPR000504 GO:0003723
Cpe14g00018 403 MobiDBLite consensus disorder prediction 1 70 - -
Cpe14g00018 403 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 403 - -
Cpe14g00018 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 282 IPR000504 GO:0003723
Cpe14g00018 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 384 IPR000504 GO:0003723
Cpe14g00018 403 Gene3D - 178 295 IPR012677 -
Cpe14g00018 403 Gene3D - 299 399 IPR012677 -
Cpe14g00018 403 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 403 - -
Cpe14g00018 403 CDD RRM1_CID8_like 217 295 IPR034823 -
Cpe14g00018 403 SMART rrm1_1 219 289 IPR000504 GO:0003723
Cpe14g00018 403 SMART rrm1_1 316 387 IPR000504 GO:0003723
Cpe14g00018 403 Pfam Ataxin-2 C-terminal region 142 155 IPR009818 -
Cpe14g00018 403 MobiDBLite consensus disorder prediction 10 63 - -
Cpe14g00018 403 CDD RRM2_CID8_like 311 392 IPR034825 -
Cpe14g00018 403 SUPERFAMILY RNA-binding domain, RBD 182 294 IPR035979 GO:0003676
Cpe14g00018 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 391 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00018 - - - csv:101204595 723.005
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00011 Cpe14g00018 CCT
Cpe09g00011 Cpe14g00018 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00018 Cpe-Chr14:110863 Cpe14g00386 Cpe-Chr14:2366234 1.94E-109 dispersed
Cpe14g00018 Cpe-Chr14:110863 Cpe09g00011 Cpe-Chr9:50087 4.66E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00018 Cpe_Chr14 FPKM 11.728813 8.61629 11.771255 12.34622 15.61297 18.129345 16.206373 20.74614 22.894302 20.235455