Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00031 ATGGATAGCCACCCTTTTACTCCAGAAGATTGTAACAAAACTGGAAAATCAAAGCCATTCACATCCACTTTCTTGGACTCTAATTGCTTCGCATTGAAAATCATTAAACCGGGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAGGCGATGGGTAGAACCAGACCTCGTTACAACAATCACTACGCCAATAATAACTATCGTCACCGTGGGAGTGCTGTTCGACCGACTAAACCTCAAGACCAATCTCTTATGGTCACCACGACTTACAGGATACTCTGTCATGATGCCAAGGCCGGGGGAGTTATTGGCAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCCGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCGGAAGGCCGGATGCCGTCGTTCTCTCCGGCGCAAGAAGCGCTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTCAATGGAATGGGCTATGGTCCTGAGGATGAGGAGGATGACTACGGCGGCGTTAGAGGAGGAGCTGGTGGCGGTAGTAGCCGTGTGGCAACAAGGCTTGTCGTGTCTAGAATGCACGTAGGTTGTTTGCTTGGCAAGGGAGGAAAGATAATCGAACAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTTCCCAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTCCAGATTGTTGGAGAAGCAAATGCTGTAAAGAAAGCTGTAGCTATCGTTTCATCACGCTTGAGAGAGAGTCAGCATCGCAACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGTATTTTACCTCCTGATGATGATTATGTTCCACCTATTGCACGACGATTATCGATGGATGGACGACCATTCAGACCACGCATATCTAATACAAGAGGCAATGACTATTCCAACCGTCAATCTAATTTTTTGGTGGAGCCTGGAGCTGCTTCTGTTAACGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATCGATAAGGTTGATAGTGTTATTGGAGACTCTGATGGAATCATAGAATTACTTCGGGATGAAGTTGGTGTGGATATCAAAGTTTCTGATCCTGTGACTGGTTCGAACGAACAGATTCTAATAATTTCTTCGGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAAGATAACATCGTAACTACAAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACCGGTGCAAATGTACATATTGTGCCACGAGAAGAACTTCCCATGTTTGTATCAGGGGCTGACGAGCTCGTACAGATCATAGGAGACATAAAAGCAGCTCGAGATGCAGTTGTTGAGTTAACATCTAGATTACGAAATTATCTTTACAAGGAACCGGTCCAGAAAGATGCAAGTCCTCCAGTCTCATTACCAAGCACCATGGGCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCATAGTGGAAATGATTCTTCAATCACAGCCTATCAAAATGTGCAACCTTTTGGAACACCACAGCTTCTAAAGGAAAATGGAGGGTCGAGCAATGAAACTGGCACGCAGAATGAAAATGACCGACGTGAAGATTTGCCTAGTGGGTTAAATAGAATCCCTGTGCCACTTGTCACTCGGAGTACACTTGAAGTTGTGATACCAGAGGCTGCAGTTCCCAAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGGTGTTATCCGGAGCCAATGTTACACTGGTAGAAGATAGACCAGATGAAACCCAGAAGATAATCCAAATATCAGGCACACCAGAGCAGGCCGAGAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCAGAAGCAAGTTCGGTATCACTATCTCCATGGCTATTGAAATCAATATTAAGCATCTATTAAGGATAGAGGTGAGGGTTGGAATTTCTCATGGATTTAACTCTCCTCCCCGGCTACAGGTGGCCGCCAGAAAGCAAGGAAATGGTGAAGGTGTCGGGCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGAGATGTCGATCTTCAAAATGGATCGAATTCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTTGTGAACGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGACGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTACCTCAAACAGGAATTTACTTGA 2589 45.04 MDSHPFTPEDCNKTGKSKPFTSTFLDSNCFALKIIKPGSKRNYYYDHQDYDSEAMGRTRPRYNNHYANNNYRHRGSAVRPTKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGSSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGEANAVKKAVAIVSSRLRESQHRNRSHFHGRLHSPERILPPDDDYVPPIARRLSMDGRPFRPRISNTRGNDYSNRQSNFLVEPGAASVNDNMMPFYGEDLVFRILCPIDKVDSVIGDSDGIIELLRDEVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREELPMFVSGADELVQIIGDIKAARDAVVELTSRLRNYLYKEPVQKDASPPVSLPSTMGSLGLEESSSNNNAAAREVHSGNDSSITAYQNVQPFGTPQLLKENGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEAAVPKLITKSKNKLAQISEVLSGANVTLVEDRPDETQKIIQISGTPEQAERAQSLLQGFILSRSKFGITISMAIEINIKHLLRIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 173557 181198 - Cp4.1LG14g06770.1 Cpe14g00031 480415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00031 862 Gene3D K Homology domain, type 1 90 173 IPR036612 GO:0003723
Cpe14g00031 862 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 439 525 IPR036612 GO:0003723
Cpe14g00031 862 Gene3D K Homology domain, type 1 618 691 IPR036612 GO:0003723
Cpe14g00031 862 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 599 - -
Cpe14g00031 862 MobiDBLite consensus disorder prediction 578 595 - -
Cpe14g00031 862 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 208 287 IPR036612 GO:0003723
Cpe14g00031 862 ProSiteProfiles Type-1 KH domain profile. 206 276 - -
Cpe14g00031 862 SMART kh_6 205 281 IPR004087 GO:0003676
Cpe14g00031 862 SMART kh_6 90 171 IPR004087 GO:0003676
Cpe14g00031 862 SMART kh_6 618 689 IPR004087 GO:0003676
Cpe14g00031 862 SMART kh_6 361 434 IPR004087 GO:0003676
Cpe14g00031 862 SMART kh_6 445 519 IPR004087 GO:0003676
Cpe14g00031 862 CDD PCBP_like_KH 93 167 - -
Cpe14g00031 862 MobiDBLite consensus disorder prediction 319 339 - -
Cpe14g00031 862 ProSiteProfiles Type-1 KH domain profile. 91 163 - -
Cpe14g00031 862 CDD KH-I 621 685 - -
Cpe14g00031 862 Gene3D - 361 523 - -
Cpe14g00031 862 MobiDBLite consensus disorder prediction 533 563 - -
Cpe14g00031 862 Pfam KH domain 209 276 IPR004088 GO:0003723
Cpe14g00031 862 Pfam KH domain 93 142 IPR004088 GO:0003723
Cpe14g00031 862 Pfam KH domain 621 685 IPR004088 GO:0003723
Cpe14g00031 862 Pfam KH domain 448 513 IPR004088 GO:0003723
Cpe14g00031 862 MobiDBLite consensus disorder prediction 285 306 - -
Cpe14g00031 862 Gene3D K Homology domain, type 1 203 285 IPR036612 GO:0003723
Cpe14g00031 862 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 355 415 IPR036612 GO:0003723
Cpe14g00031 862 ProSiteProfiles Type-1 KH domain profile. 362 429 - -
Cpe14g00031 862 ProSiteProfiles Type-1 KH domain profile. 619 684 - -
Cpe14g00031 862 MobiDBLite consensus disorder prediction 529 563 - -
Cpe14g00031 862 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 38 599 - -
Cpe14g00031 862 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 611 691 IPR036612 GO:0003723
Cpe14g00031 862 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 144 IPR036612 GO:0003723
Cpe14g00031 862 MobiDBLite consensus disorder prediction 578 611 - -
Cpe14g00031 862 CDD PCBP_like_KH 210 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00031 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1150.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00031 Cpe-Chr14:173557 Cpe15g00381 Cpe-Chr15:5032892 7.36E-09 dispersed
Cpe14g00025 Cpe-Chr14:147623 Cpe14g00031 Cpe-Chr14:173557 9.01E-73 proximal
Cpe14g00031 Cpe-Chr14:173557 Cpe09g00022 Cpe-Chr9:123151 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00031 Cpe_Chr14 FPKM 28.629339 32.236553 32.576401 33.487194 28.120651 24.087761 27.779282 48.574741 50.450439 47.598549