Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00037 ATGAGTGAAGAAGTGGGTGTTTTTGCTAATTTGAAATGTGGGTTTTCAATTCCATTCTCGTTCGGTGTTGGATTTGAGACCAGATTCCGGATTCGGAGGTGGCGCCACAAGCCCCACTCAGCTTCTGTTCTGATGAAACTGGATGAGATTGATAAGTGTAGAGTGCCAAAGGATGAAATGCAAGAGGGAGGGCTTTCCCATGAAGATCCAACCAACCTTCGTTCCAAGAAACTTCAAGATGATCTGCAAACGCTGGGGACGAAGCTCCAGCTGCATGAGGACAACATAAGATTTCTAAGGACTCTGAAAGACAAATTAGTTGATTCCATCATTGATCTGCAAGTTACCCTAGGAAAGTACCATGCTTCGAGTACGCCTAAGATTGAGACCCAGGATGGTGCTGATACCCAAAGTGAAGATAAGCTATCAGATCAGAAACAGATTCTGCAGGAGGAAAACAGTGCTGCCAGCATCTTGTGCCAGCTCAAAACTAATCCCAAGATGCTGGCTTCAGACCCTACACTTTCTGATGATGTGCTAGGTGTTGTTGCTGAACTAGGAAAAGTAGATGACAGTGTCCTTAGCAGCCTTTTATCGGAGTACCTAGGAACAGAGACCATGTTGGCTATTGTCTGCAAGACATATAATGGAGTCAAATCTCTAGAAAAGTATGACAAGGAAGGATGCATAAATAAAACATCCGGGCTTCACGGATTTGGCACTTCACTTGGGAAAACTTTAGAGGGACGATTCAATGTCATATCTCTTGAAACATTGAGACCATATGCTGGTGACTTTGTGGCCAACGATCCGCAGAAAAGGCTTGATATTCCTAACCCAAGATTGCCTAATGGGGACTGTCCAGCCGGTTTTATTGGTTATGCTGTTAATATGATCAACATAGACAGAACATACTTGTTTTTTCTCACACCAAGTGGATATGGTCTTAGAGAGACTCTGTTTTATTCTCTATTTTCTTGTCTGCAAATCTATAAAACTAGGACAGAAATGTTGCAAGCTGTTCCTTGCATAACCGACGGAGCGCTCTCTTTGGATGGCGGGATTATTAAAAGGAGTGGACTGTTCTGTCTCGGCAATAGGGATGATGTGAAGGTGAGGTTTTCCAAGACATCAACAAATTCAAGCCTGCCTGACCATTACACAGAATCTGAGAGACAGATGAAAGAAATGAAATGGAAAAAAGAAAAAATTCTTGAAGATATGAGGAGAGAACAAGCGTTGCTAGATAGCACGAGGCTCAATTTTGAAAGAAAGAAGATGGAGTTTGTGCAGTTCCTAGCTGAAACTGCCGCTCGGCAACAAACTCCAGTTGCAATGGGGAGATCAGCTGGACGCGGATACCCACACGCCCTCCACCCTCAAGCTTGTAATCCGCCCACTTCCATCTCTGTTGCATCGGAGCTCCACTGCAGTGTCCTCCCATCATCCTCCCCGGGACATTTTCAAGCAAGAATGGCAGGCAAGGCTGTCAAATCTGTGGCGAAGGCCATCGGTGAGTATCAGTATCCATGGCAGGAGAAGTTGGTGAAATACAAGAATGAGCTATCCAAAGGTGTTTGGGGTTACTGGGAATTAGGGGCATGGAAGCCACTTGGCATAAGTGCACGCCGTCGTGCCAGACTTCGGAAGGAAGTACTTCTTGCAGGGCAGGATTGGGCATATGATCCAGAGAGGAAAGAGATGAGAACCAAGAGGAAAGGCCATAAATGTGATCGTATAGCTGCAGAAAAACGTGAAAACACTGCCAGGCTGATGGAGAAAATGCCAGACATGTTGCTTCAATACAAGAAGCGCAGGTGGGAGAAGAAGATGAAGGAAGAAGAGAAGAAAAAGCAGCAATGA 1863 45.03 MSEEVGVFANLKCGFSIPFSFGVGFETRFRIRRWRHKPHSASVLMKLDEIDKCRVPKDEMQEGGLSHEDPTNLRSKKLQDDLQTLGTKLQLHEDNIRFLRTLKDKLVDSIIDLQVTLGKYHASSTPKIETQDGADTQSEDKLSDQKQILQEENSAASILCQLKTNPKMLASDPTLSDDVLGVVAELGKVDDSVLSSLLSEYLGTETMLAIVCKTYNGVKSLEKYDKEGCINKTSGLHGFGTSLGKTLEGRFNVISLETLRPYAGDFVANDPQKRLDIPNPRLPNGDCPAGFIGYAVNMINIDRTYLFFLTPSGYGLRETLFYSLFSCLQIYKTRTEMLQAVPCITDGALSLDGGIIKRSGLFCLGNRDDVKVRFSKTSTNSSLPDHYTESERQMKEMKWKKEKILEDMRREQALLDSTRLNFERKKMEFVQFLAETAARQQTPVAMGRSAGRGYPHALHPQACNPPTSISVASELHCSVLPSSSPGHFQARMAGKAVKSVAKAIGEYQYPWQEKLVKYKNELSKGVWGYWELGAWKPLGISARRRARLRKEVLLAGQDWAYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQYKKRRWEKKMKEEEKKKQQ 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 197755 204046 + Cp4.1LG14g06880.1 Cpe14g00037 480421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00037 620 Coils Coil 75 95 - -
Cpe14g00037 620 Coils Coil 387 407 - -
Cpe14g00037 620 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 69 441 - -
Cpe14g00037 620 Coils Coil 604 620 - -
Cpe14g00037 620 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 69 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00037 - - - csv:101206394 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00317 Cpe-Chr13:2736265 Cpe14g00037 Cpe-Chr14:197755 1.18E-160 wgd
Cpe14g00037 Cpe-Chr14:197755 Cpe05g00599 Cpe-Chr5:3638213 7.30E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1038 . . . . . . . . Cmo16g00053 . . . . Car15g00958 . . Cpe14g00037 Bhi01g01493 Tan01g0091 . . . Mch10g0576 . . . . . . . . Cone1ag0984 . . . . . . Cme06g01145 . . . . . . . . . . . . . Car16g00042 . . . Bhi12g00642 . . Lac11g0158 Hepe06g0792 . Lcy12g0135 Cla05g00972 Cam05g1063 Cec05g1069 Cco05g1062 Clacu05g1056 Cmu05g1007 Cre05g1084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001858 1 3 1 0 1 2 3 2 2 3 2 2 1 2 2 2 2 2 3 2 3 2 2 2 2 2 2 11 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00037 Cpe_Chr14 FPKM 3.004016 3.738823 12.200614 12.100743 4.911121 5.45982 5.367023 5.597212 5.783458 6.172983