Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00039 ATGGATTTGGATAGTATTGAGTGTGTATCGTCTTCAGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCATCGACGAAACCTCGTAATGGAAGCAACAATAGTGCTATCACAGGCCCCACTGCGACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGCACCAATTCTATGTACCCACCCATCCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCGGAGTCACTCGAATTGCCTTGCAAGTATTATTCCTTGGGATGCCCTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCATACAATTGCCCATATGCCGGGTCGGAATGCTCTGCTGTTGGAGATATTCCTTTCCTTGTTGCTCATCTGAGGGATGACCACAAGGTGGACATGCACAGTGGATGCACATTCAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCAATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCTCGAACCTACAGCTACAGTCTTGAGGTTGGTGGATACGGTCGAAAACTAATATGGGAAGGCACGCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTATTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAATCCAGATGCTGGGGTCTGCATACCGAACCTGTGTAGCTGA 996 45.98 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSSTKPRNGSNNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 210301 216068 + Cp4.1LG14g06800.1 Cpe14g00039 480423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00039 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Cpe14g00039 331 CDD RING-HC_SIAHs 68 106 - -
Cpe14g00039 331 CDD Sina 184 312 - -
Cpe14g00039 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
Cpe14g00039 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cpe14g00039 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe14g00039 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Cpe14g00039 331 MobiDBLite consensus disorder prediction 41 58 - -
Cpe14g00039 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 311 IPR008974 GO:0005515
Cpe14g00039 331 SUPERFAMILY TRAF domain-like 123 315 - -
Cpe14g00039 331 SUPERFAMILY RING/U-box 58 110 - -
Cpe14g00039 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Cpe14g00039 331 MobiDBLite consensus disorder prediction 28 58 - -
Cpe14g00039 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 177 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00474 Cpe-Chr12:4513988 Cpe14g00039 Cpe-Chr14:210301 6.14E-180 dispersed
Cpe13g00488 Cpe-Chr13:5045754 Cpe14g00039 Cpe-Chr14:210301 4.15E-169 dispersed
Cpe14g00039 Cpe-Chr14:210301 Cpe17g01016 Cpe-Chr17:7696655 1.43E-169 dispersed
Cpe14g00039 Cpe-Chr14:210301 Cpe09g00015 Cpe-Chr9:86520 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00039 K04506 - csv:101215696 668.692