Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe14g00052 | ATGTCGGTGATCAGGAGTCTCATGATGGTCGATACGGGTGCATCGGAAACTCGTGCGCCGGTTGTTGATAAGCATCCGGAGAAAGATGAAGATGGTGGTTATGCCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCGAGTCTCCGAGGAAAGAGGGCGACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGGTTGATGGTCAAATAGTCTGCCTTTTTGGCATCTTTGATGGTCATGGTGGATACCGTGCTGCAGAGTTTTTGAAGGACCATCTCTTCGAGAATCTGATAAAGCACCCAAAATTTTTGATAGATACCAAATTAGCTATCACCATCCCTCTTTCTGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGCGAATTGAAAATGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCGATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTCGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTGGACAAGGACATCGAGCTGCTTGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCGGGGAAAGAAGAGGGACCTGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCAAGCACGGGTGTCGAAAACGACTAA | 759 | 48.09 | MSVIRSLMMVDTGASETRAPVVDKHPEKDEDGGYASGGWKSEDGKLSWGYSSLRGKRATMEDFFDIKMSKVDGQIVCLFGIFDGHGGYRAAEFLKDHLFENLIKHPKFLIDTKLAITIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEEGPEAAARKLTEAAFTRGSADNITCIVVKFHHDNASTGVEND | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 290547 | 293821 | + | Cp4.1LG14g06700.1 | Cpe14g00052 | 480436 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe14g00052 | 252 | CDD | PP2Cc | 49 | 240 | IPR001932 | - | |
| Cpe14g00052 | 252 | SMART | PP2C_4 | 37 | 238 | IPR001932 | - | |
| Cpe14g00052 | 252 | ProSiteProfiles | PPM-type phosphatase domain profile. | 11 | 240 | IPR001932 | - | |
| Cpe14g00052 | 252 | PANTHER | ALPHABET, ISOFORM E-RELATED | 118 | 247 | - | - | |
| Cpe14g00052 | 252 | PANTHER | ALPHABET, ISOFORM E-RELATED | 17 | 117 | - | - | |
| Cpe14g00052 | 252 | Gene3D | - | 39 | 112 | IPR036457 | - | |
| Cpe14g00052 | 252 | SUPERFAMILY | PP2C-like | 43 | 241 | IPR036457 | - | |
| Cpe14g00052 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 118 | 247 | - | - | |
| Cpe14g00052 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 17 | 117 | - | - | |
| Cpe14g00052 | 252 | Pfam | Protein phosphatase 2C | 119 | 233 | IPR001932 | - | |
| Cpe14g00052 | 252 | MobiDBLite | consensus disorder prediction | 18 | 36 | - | - | |
| Cpe14g00052 | 252 | ProSitePatterns | PPM-type phosphatase domain signature. | 78 | 86 | IPR000222 | GO:0043169 | |
| Cpe14g00052 | 252 | Gene3D | - | 113 | 252 | IPR036457 | - | |
| Cpe14g00052 | 252 | MobiDBLite | consensus disorder prediction | 18 | 38 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g02092 | Cpe-Chr1:17720587 | Cpe14g00052 | Cpe-Chr14:290547 | 6.26E-53 | dispersed | |
| Cpe13g00656 | Cpe-Chr13:6210136 | Cpe14g00052 | Cpe-Chr14:290547 | 6.31E-68 | dispersed | |
| Cpe14g00052 | Cpe-Chr14:290547 | Cpe02g00373 | Cpe-Chr2:2056433 | 4.62E-37 | dispersed | |
| Cpe14g00052 | Cpe-Chr14:290547 | Cpe09g00038 | Cpe-Chr9:231284 | 2.13E-158 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe14g00052 | K17506 | - | csv:101203681 | 395.971 |