Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00053 ATGGGACTCTCCGGCCTGCTTTCCGGTCACCGGAACTCCGTACAAGGTTCCGATTTTCACAATTACACTTCATGGCTGAAACAATATCCCAGTGGTTTGGAATCGTTTGAGAGCATAATGAAAGAGCTACCGAGGAAGAAGATTGTGGTGTTCTTGGATTACGATGGAACCCTTTCTCCCATTGTGGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGAAGCTGTAAGAGAAGTGGCAAAATGCTTTCCAACAGCCATAATAAGCGGAAGAAGCCGAGAAAAAGTAAAGGAGTTCGTGAAATTGAGGAATCTGCACTATGCTGGGAGCCATGGATTAGACATTATGGCTCCAAATTCGGACAATGAGGCTAATGGGGTTTCCTATCAACCAGCCAAGAAGTTTTTACCGGAAATTCAACAAATAAAACGCGCATTAGAGGAAGAAAGTAGAAAGATCGAAGGTGCATTGGTGGAGGATAATACGTTTTGTGTTTCTGTACACTTTCGGCACGTGCACGAAAGGGAGTTGGCGAAATTAGAAAAGAAGGTGGAAACTGTTATGGAAAAATATCCTGATTTTCATGTAACGCAGGGCAAAAAGGTTATGGAAATAAGGCCGACCATTAATTGGAACAAAGGGCATGCAATGGAGTATTATCTGCACACTCTCGGACATAACGACACGGACGATGTGGTTCCGTTGTACATTGGCGATGATCAAACGGACGAGGACGCTTTCAAGGTAATACAAAGGAAAGGACAAGGAATTGCGATACTCGTGGCATCCATTCCAAAGCACACAAACGCTTCCTACTCGTTGAAGGACCCATCGGAGGTTCTTGCTTTTTTGCTAAGGCTGGCCAGATGGAGGAACTCCACATCCCCTTCAATTACAACCCCATCTCCTAATATTTAA 924 44.37 MGLSGLLSGHRNSVQGSDFHNYTSWLKQYPSGLESFESIMKELPRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMREAVREVAKCFPTAIISGRSREKVKEFVKLRNLHYAGSHGLDIMAPNSDNEANGVSYQPAKKFLPEIQQIKRALEEESRKIEGALVEDNTFCVSVHFRHVHERELAKLEKKVETVMEKYPDFHVTQGKKVMEIRPTINWNKGHAMEYYLHTLGHNDTDDVVPLYIGDDQTDEDAFKVIQRKGQGIAILVASIPKHTNASYSLKDPSEVLAFLLRLARWRNSTSPSITTPSPNI 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 296573 298432 + Cp4.1LG14g06680.1 Cpe14g00053 480437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00053 307 TIGRFAM T6PP: trehalose-phosphatase 46 290 IPR003337 GO:0003824|GO:0005992
Cpe14g00053 307 Coils Coil 172 192 - -
Cpe14g00053 307 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 301 IPR044651 GO:0004805|GO:0005992
Cpe14g00053 307 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 301 - -
Cpe14g00053 307 SUPERFAMILY HAD-like 49 291 IPR036412 -
Cpe14g00053 307 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 50 254 IPR006379 -
Cpe14g00053 307 CDD HAD_TPP 49 284 - -
Cpe14g00053 307 Pfam Trehalose-phosphatase 51 280 IPR003337 GO:0003824|GO:0005992
Cpe14g00053 307 Gene3D - 50 276 IPR023214 -
Cpe14g00053 307 Gene3D - 134 210 - -
Cpe14g00053 307 Coils Coil 141 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00053 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 438.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00053 Cpe-Chr14:296573 Cpe14g00877 Cpe-Chr14:7238298 5.78E-102 dispersed
Cpe14g00053 Cpe-Chr14:296573 Cpe14g00161 Cpe-Chr14:877991 1.29E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00053 Cpe_Chr14 FPKM 1.239583 0.0 0.272483 0.547365 0.0 0.0 0.0 0.325212 0.0 0.0