Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00057 ATGGTTGATAATTTAGCTGACTTTTTCCAACAAAATGAAGAATTTGTCGACCATACCACAAACCCCCAGTTGGAAGGATATGACCTCTTCAGCATCTTTGATAGTTTGGAGAATGTTGCAGAATTCAGTATGATCGAGGACGACACCGAGCTTGAGACTTCCCCTAAAACCAAGCGCTTGAAACTGAACGGTTCCGCTATGGCTGGTGTCTCTTCCTCAGAGGATGCAAACCCTGATGGAGCACAAAGAATGTCTCACATCACGGTAGAGCGCAACCGTAGGAAGCAAATGAACGAGCACTTGTCGGTGTTGAGATCGCTCATGCCTTGTTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAACAAGTTCTTCAATCACTAGAGGCCAAAAAGCAAAGGAAAGTGTATAGTGAAGTGTTGAGCCCTAGGGTTGTTTCAAGTCCAAGGCCTTTGCCAATGAGTCCAAGAAAGCCACCACCACTAAGTCCAAATGTGGTTTTGAAGACAGTTTCTGCTCCAATCCCTGGACAAGCTGTTAAGATCATTGCTGCCCTTGAACAACTCTCCCTAGAAATTCTCCATGTCAAGATCACCACCGTTGATGATACCATGTTTAACTCTTTTACAATTAAGATCGGAATTGAATGCCAACTTAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 735 43.81 MVDNLADFFQQNEEFVDHTTNPQLEGYDLFSIFDSLENVAEFSMIEDDTELETSPKTKRLKLNGSAMAGVSSSEDANPDGAQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRPLPMSPRKPPPLSPNVVLKTVSAPIPGQAVKIIAALEQLSLEILHVKITTVDDTMFNSFTIKIGIECQLSAEELAHQIQQTFC 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 313862 316005 - Cp4.1LG14g06550.1 Cpe14g00057 480441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00057 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 174 244 - -
Cpe14g00057 244 SMART finulus 87 138 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR FAMA 174 244 IPR044283 GO:0003700|GO:0010052
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR FAMA 46 175 IPR044283 GO:0003700|GO:0010052
Cpe14g00057 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 156 IPR036638 GO:0046983
Cpe14g00057 244 CDD bHLH_AtFAMA_like 84 157 - -
Cpe14g00057 244 Pfam Helix-loop-helix DNA-binding domain 82 133 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 46 175 - -
Cpe14g00057 244 Coils Coil 125 145 - -
Cpe14g00057 244 Gene3D - 73 147 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00057 K20558 SPCH; transcription factor SPEECHLESS - csv:101211617 236.498
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00043 Cpe14g00057 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00281 Cpe-Chr4:3536936 Cpe14g00057 Cpe-Chr14:313862 8.39E-08 dispersed
Cpe08g00243 Cpe-Chr8:1599539 Cpe14g00057 Cpe-Chr14:313862 1.03E-44 dispersed
Cpe14g00057 Cpe-Chr14:313862 Cpe07g00192 Cpe-Chr7:1197560 1.07E-33 dispersed
Cpe19g00114 Cpe-Chr19:920502 Cpe14g00057 Cpe-Chr14:313862 6.24E-09 dispersed
Cpe14g00057 Cpe-Chr14:313862 Cpe09g00043 Cpe-Chr9:252234 1.11E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008152 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50475 PF00010 HLH 2.50E-12 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00057 Cpe_Chr14 FPKM 73.435501 78.670456 106.284904 107.182869 37.995956 36.377628 40.308655 36.389927 34.031139 35.559525