Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00083 ATGGCGGACATGGCTGATGCTGAGACCTTCGCCTTCCAGGCCGAGATTAACCAGCTTCTCAGTTTGATTATCAATACTTTCTACAGCAACAAGGAGATCTTCCTTCGAGAGCTTATCAGCAACTCCTCTGACGCATTGGACAAGATTCGATATGAGAGTTTGACTGATAAGAGCAAACTTGACGCTCAACCAGAGCTTTTCATCAGAATTGTTCCGGACAAGGACAACAAAACTCTCTCCATCATCGATAGTGGAGTCGGAATGACTAAAGCAGATCTGGTGAATAACTTGGGAACCATCGCAAGGTCGGGGACCAAAGAATTCATGGAGGCATTGCAGGCCGGCGCCGATGTCAGCATGATCGGTCAATTCGGTGTAGGGTTCTATTCGGCTTACCTTGTGGCCGAGAAGGTGATTGTGACCACAAAGCACAATGACGACGAGCAATACGTATGGGAATCGCAGGCCGGTGGTTCCTTCACTGTCACAAGGGACGTCAGTGGAGAGCAACTCGGAAGGGGTACCAAGATCACACTCTTCCTCAAGGAGGATCAGTTGGAGTATTTAGAAGAGAGAAGGATCAAGGACCTCGTGAAGAAGCACTCTGAGTTCATCAGCTATCCCATCTATCTGATAGTGGACTCTCCTTGCTGCTTGGTCACCGGCGAATACGGCTGGACGGCAAACATGGAGAGAATCATGAAGGCCCAAGCTCTCAGGGACAACAGCATGGGCGCTTACATGTCAAGCAAGAAGACAATGGAGATCAACCCAGATAATGGAATCATGGAGGAGCTAAGGAAAAGAGCCGAGGCGGACAAAAACGACAAATCCGTCAAGGATTTGGTCATGCTCCTCTTCGAAACTGCTCTATTGACTTCTGGTTTCAGCCTTGATGATCCGAATACATTTGCTGCGAGAATCCACAGAATGTTGAAACTTGGTCTTAGCATCGACGAGGAGGAAAATGAAGGAGGAGATGATGCGGACATGCCTGCTTTGGAGGAAGATGGTGCTGAAGAGAGCAAAATGGAGGAGGAAACAAATATCCATACTTTACGTGAAAGCTATAAGATACAGAAGCAACCTCGCACTGTCCACATACTCGGAACGGGGACTAGAGGAACATTCTTCCCTCTTGCTCTAAGAAGCGACAGTGGGCGAATATACAACAGCAATACAATACTA 1188 47.81 MADMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDKSKLDAQPELFIRIVPDKDNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMGAYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEENEGGDDADMPALEEDGAEESKMEEETNIHTLRESYKIQKQPRTVHILGTGTRGTFFPLALRSDSGRIYNSNTIL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 453666 456551 - Cp4.1LG14g06400.1 Cpe14g00083 480467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00083 396 SUPERFAMILY HSP90 C-terminal domain 212 312 IPR037196 -
Cpe14g00083 396 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8 214 IPR036890 -
Cpe14g00083 396 SMART HKATPase_4 30 185 IPR003594 -
Cpe14g00083 396 MobiDBLite consensus disorder prediction 321 348 - -
Cpe14g00083 396 CDD HATPase_Hsp90-like 17 205 - -
Cpe14g00083 396 MobiDBLite consensus disorder prediction 321 343 - -
Cpe14g00083 396 ProSitePatterns Heat shock hsp90 proteins family signature. 28 37 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cpe14g00083 396 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 211 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe14g00083 396 PANTHER HEAT SHOCK PROTEIN 90-1 3 211 - -
Cpe14g00083 396 Pfam Hsp90 protein 187 213 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe14g00083 396 Pfam Hsp90 protein 212 336 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 29 51 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 78 95 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 191 209 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 8 28 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 121 143 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 96 113 IPR020575 -
Cpe14g00083 396 PRINTS 90kDa heat shock protein signature 173 190 IPR020575 -
Cpe14g00083 396 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 212 347 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe14g00083 396 Gene3D - 1 217 IPR036890 -
Cpe14g00083 396 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 184 IPR003594 -
Cpe14g00083 396 PANTHER HEAT SHOCK PROTEIN 90-1 212 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00083 K04079 HSP90A, htpG; molecular chaperone HtpG - aga:AgaP_AGAP006961 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00815 Cpe-Chr8:6486124 Cpe14g00083 Cpe-Chr14:453666 2.74E-167 dispersed
Cpe13g00465 Cpe-Chr13:4887606 Cpe14g00083 Cpe-Chr14:453666 7.72E-23 dispersed
Cpe14g00083 Cpe-Chr14:453666 Cpe05g01398 Cpe-Chr5:9811770 2.04E-21 dispersed
Cpe14g00083 Cpe-Chr14:453666 Cpe14g00814 Cpe-Chr14:6520759 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00083 Cpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0